Merge pull request #719 from RECETOX/copilot/update-spec2vec-version

hechth · web-flow · commit 96a473c6b7c8 · 2025-12-11T13:29:58.000Z
Update spec2vec from 0.8.0 to 0.9.1
diff --git a/tools/spec2vec/Dockerfile b/tools/spec2vec/Dockerfile
@@ -1,6 +1,6 @@
 FROM python:3.9
 
-ARG COMMIT_SHA=c9b54b950e0dbb8053ba95aabdb2d815e11e7503
+ARG COMMIT_SHA=9eaefa3ecee9649e8822549eaa6275f11d84ad44
 
 WORKDIR /spec2vec
 
diff --git a/tools/spec2vec/macros.xml b/tools/spec2vec/macros.xml
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">0.8.0</token>
+    <token name="@TOOL_VERSION@">0.9.1</token>
 
     <xml name="creator">
         <creator>
diff --git a/tools/spec2vec/spec2vec_similarity.xml b/tools/spec2vec/spec2vec_similarity.xml
@@ -1,4 +1,4 @@
-<tool id="spec2vec_similarity" name="spec2vec similarity" version="@TOOL_VERSION@+galaxy4" profile="21.09">
+<tool id="spec2vec_similarity" name="spec2vec similarity" version="@TOOL_VERSION@+galaxy0" profile="21.09">
     <description>Compute spectral similarity scores between mass spectra using the Spec2Vec algorithm and a trained model.</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/spec2vec/spec2vec_training.xml b/tools/spec2vec/spec2vec_training.xml
@@ -1,4 +1,4 @@
-<tool id="spec2vec_training" name="spec2vec model training" version="@TOOL_VERSION@+galaxy2" profile="21.09">
+<tool id="spec2vec_training" name="spec2vec model training" version="@TOOL_VERSION@+galaxy0" profile="21.09">
     <description>Train a Spec2Vec model for mass spectra similarity scoring</description>
 
     <macros>

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="spec2vec_similarity" name="spec2vec similarity" version="@TOOL_VERSION@+galaxy4" profile="21.09">`
	`1`	`+<tool id="spec2vec_similarity" name="spec2vec similarity" version="@TOOL_VERSION@+galaxy0" profile="21.09">`
`2`	`2`	`<description>Compute spectral similarity scores between mass spectra using the Spec2Vec algorithm and a trained model.</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="spec2vec_training" name="spec2vec model training" version="@TOOL_VERSION@+galaxy2" profile="21.09">`
	`1`	`+<tool id="spec2vec_training" name="spec2vec model training" version="@TOOL_VERSION@+galaxy0" profile="21.09">`
`2`	`2`	`<description>Train a Spec2Vec model for mass spectra similarity scoring</description>`
`3`	`3`
`4`	`4`	`<macros>`