Skip to content

Create an Upset plot using UpsetR R package #634

@KristinaGomoryova

Description

@KristinaGomoryova

There is an Upset tool on Galaxy, based on Intervene which is a command line tool, but it accepts the data in a special format and I haven't been able to run it on a simple tabular data...

I would actually opt for creating an upset plot based on widely used UpSetR package which accepts both lists and tabular data.

User would supply a table where ideally rows = features, columns = samples, and within the tool a binary matrix would be firstly created (0 intensity -> 0; any non-zero intensity -> 1). Out of that the plot can be created easily using the upset() function.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions