@@ -8,48 +8,68 @@ X-Ray Science) develops training materials for the community of
88scientists and researchers using the [ CHESS] synchrotron X-ray
99facility and similar light sources.
1010
11- This is the training overview:
11+ Our training modules will get you up to speed in working with the
12+ CyberInfrastructure ("CI") at CHESS - the High Performance Computing
13+ (HPC)
14+ and Networking resources. Understanding the CI and how to use it is
15+ practically essential for making the most of your beamline time and
16+ the analysis that follows after the fact.
17+
18+ Below you'll find links to the training modules we have
19+ developed. These are grouped by general topic into "Themes". The first
20+ theme is named "Essential Elements" and is, as the name suggests,
21+ absolutely critical. Make certain you understand the material in that
22+ theme before you move on to the others, but once you cross this hurdle
23+ you can move through the other themes in any order. Some of the
24+ Essentials topics may be old hat to you (Python programming, for
25+ instance) while other are highly CHESS-specific (Data Collection).
26+
27+ ## Theme 0: Essential Elements
28+
29+ - XS 100: [ Data collection, preparing input parameters, SPEC and
30+ CLI] [ xs100 ]
31+ - SF 100: [ Intro to Linux, the command line, and programming in Python] [ sf100 ]
32+ - XS 101: [ Basic / on-the-fly data analysis, viewing detector
33+ images] [ xs101 ]
34+ - PE 100: [ Python Programming and Jupyter notebooks] [ pe100 ]
35+
36+
37+
1238
1339## Theme 1: Programming Fundamentals
1440
15- - PE 100: [ Python Programming and Jupyter notebooks] [ pe100 ]
1641- PE 101: [ Using Python packages & libraries, Conda] [ pe101 ]
1742- PE 102: [ Numerical data analysis with Python] [ pe102 ]
1843- PE 103: [ Software version control] [ pe103-vcs ] ,
19- [ testing] [ pe103-testing ] , and [ debugging] [ pe103-debugging ]
20-
44+ [ testing] [ pe103-testing ] , and [ debugging] [ pe103-debugging ]
45+
2146## Theme 2: Systems Fundamentals
2247
23- - SF 100: [ Intro to Linux, the command line, and programming in Python] [ sf100 ]
24- - SF 101: [ Containers and virtualization] [ sf101 ] 🚧
25- - SF 200: [ Parallel computing concepts] [ sf200 ] 🚧
26- - SF 201: [ Batch systems and compute farms with CHESS example] [ sf201 ] 🚧
48+ - SF 101: [ Containers and virtualization] [ sf101 ]
49+ - SF 200: [ Parallel computing concepts] [ sf200 ]
50+ - SF 201: [ Batch systems and compute farms with CHESS example] [ sf201 ]
2751
2852## Theme 3: Distributed Computing and the CI Ecosystem
2953
3054- DC 100: [ Distributed computing concepts] [ dc100 ]
3155- DC 101: [ Scientific workflow management] [ dc101 ]
32- - DC 102: [ Using science gateways with Open OnDemand example] [ dc102 ] 🚧
56+ - DC 102: [ Using science gateways with Open OnDemand example] [ dc102 ]
3357- DC 200: [ Computing with CI ecosystem - ACCESS, PATh, Campus] [ dc200 ]
3458
3559## Theme 4: X-Ray Science S&E Software
3660
37- - XS 100: [ Data collection, preparing input parameters, SPEC and
38- CLI] [ xs100 ]
39- - XS 101: [ Basic / on-the-fly data analysis, viewing detector images] [ xs101 ]
4061- XS 102: [ Large-scale data analysis: from images to science
41- parameters to interpretation] [ xs102 ] 🚧
42- - XS 200: [ Metadata for data fidelity and systematic checks] [ xs200 ] 🚧
62+ parameters to interpretation] [ xs102 ]
63+ - XS 200: [ Metadata for data fidelity and systematic checks] [ xs200 ]
4364
4465## Theme 5: Data Curation and FAIR
4566
46- - CF 100: [ Intro to domain metadata standards, formats and repositories] [ cf100 ] 🚧
47- - CF 101: [ Best practices for developing DMP] [ cf101 ] 🚧
48- - CF 102: [ Metadata annotation and DOI] [ cf102 ] 🚧
49- - CF 200: [ Curating data, code, workflows, and publishing] [ cf200 ] 🚧
67+ - CF 100: [ Intro to domain metadata standards, formats and repositories] [ cf100 ]
68+ - CF 101: [ Best practices for developing DMP] [ cf101 ]
69+ - CF 102: [ Metadata annotation and DOI] [ cf102 ]
70+ - CF 200: [ Curating data, code, workflows, and publishing] [ cf200 ]
5071
5172
52- [ Meanwhile...] [ newsite ]
5373
5474<!-- References -->
5575
@@ -85,4 +105,3 @@ This is the training overview:
85105[ cf102 ] : ./theme5/CF102/metadata-annotation-and-doi.md
86106[ cf200 ] : ./theme5/CF200/curating-data.md
87107
88- [ newsite ] : ./newsite/index.md
0 commit comments