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.clang-format

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# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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# Format all files in include/test folder, including std module, excluding contrib module
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- NS_SWIFT_NAME
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- PP_STRINGIZE
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- STRINGIZE
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- SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY_START
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- SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY_STOP
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- reduction
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...

.cmake-format.yaml

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# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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_seqan3_cmake_format_documentation_only:
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pargs: 1
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kwargs:
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CYCLIC_DEPENDING_INCLUDES: '+'
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cpmaddpackage:
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pargs:
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nargs: '*'
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flags: []
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spelling: CPMAddPackage
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kwargs: &cpmaddpackagekwargs
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NAME: 1
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FORCE: 1
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VERSION: 1
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GIT_TAG: 1
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DOWNLOAD_ONLY: 1
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GITHUB_REPOSITORY: 1
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GITLAB_REPOSITORY: 1
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GIT_REPOSITORY: 1
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SVN_REPOSITORY: 1
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SVN_REVISION: 1
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SOURCE_DIR: 1
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DOWNLOAD_COMMAND: 1
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FIND_PACKAGE_ARGUMENTS: 1
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NO_CACHE: 1
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GIT_SHALLOW: 1
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URL: 1
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URL_HASH: 1
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URL_MD5: 1
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DOWNLOAD_NAME: 1
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DOWNLOAD_NO_EXTRACT: 1
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HTTP_USERNAME: 1
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HTTP_PASSWORD: 1
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EXCLUDE_FROM_ALL: 1
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SYSTEM: 1
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SOURCE_SUBDIR: 1
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QUIET: 1
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PATCHES: +
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OPTIONS: +
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cpmfindpackage:
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pargs:
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nargs: '*'
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flags: []
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spelling: CPMFindPackage
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kwargs: *cpmaddpackagekwargs
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cpmdeclarepackage:
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pargs:
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nargs: '*'
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flags: []
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spelling: CPMDeclarePackage
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kwargs: *cpmaddpackagekwargs
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packageproject:
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pargs:
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nargs: '*'
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flags: []
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spelling: packageProject
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kwargs:
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NAME: 1
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VERSION: 1
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NAMESPACE: 1
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INCLUDE_DIR: 1
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INCLUDE_DESTINATION: 1
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INCLUDE_HEADER_PATTERN: 1
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BINARY_DIR: 1
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COMPATIBILITY: 1
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VERSION_HEADER: 1
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EXPORT_HEADER: 1
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DISABLE_VERSION_SUFFIX: 1
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CPACK: 1
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DEPENDENCIES: +
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cpmgetpackage:
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pargs: 1
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spelling: CPMGetPackage
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cpmusepackagelock:
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pargs: 1
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spelling: CPMUsePackageLock
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cpmregisterpackage:
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pargs: 1
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spelling: CPMRegisterPackage
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cpmgetpackageversion:
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pargs: 2
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spelling: CPMGetPackageVersion
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_help_override_spec:
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- Override configurations per-command where available
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override_spec: {}

.codecov.yml

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# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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# See https://docs.codecov.io/docs/codecovyml-reference

.editorconfig

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# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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# https://EditorConfig.org

.github/ISSUE_TEMPLATE/bug_report.yml

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# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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name: 🐞 Bug report

.github/ISSUE_TEMPLATE/config.yml

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# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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blank_issues_enabled: true
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Failure {{ build }} on gcc{{ compiler }}
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Failure {{ build }} on {{ compiler }}
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---
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See {{ url }} for more information.
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SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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SPDX-License-Identifier: CC0-1.0
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SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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SPDX-License-Identifier: CC0-1.0
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SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
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SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
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SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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SPDX-License-Identifier: CC0-1.0

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