Merge pull request seqan#3277 from eseiler/infra/nightly

[INFRA] Nightly fixes

Author: eseiler

CHANGELOG.md

@@ -326,8 +326,8 @@ Note that 3.1.0 will be the first API stable release and interfaces in this rele
   * The order of tags within the header may be arbitrary. Before, necessary tags where required to be first.
   * Unknown tags will emit a warning. Before, a error was raised.
 
-## API changes
-<a name="api303"></a>
+## API changes {#api303}
+
 Most of our API or header file changes will trigger a deprecation warning to let you know if something changed and, if
 applicable, when it will be removed. We recommend upgrading version-by-version to check whether you need to change code.
 You can either directly check the reported code or verify with our documentation how the new API should be used.

include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp

@@ -133,8 +133,15 @@ class pairwise_alignment_algorithm_banded :
         size_t const sequence1_size = std::ranges::distance(simd_seq1_collection);
         size_t const sequence2_size = std::ranges::distance(simd_seq2_collection);
 
+#if SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY
+#    pragma GCC diagnostic push
+#    pragma GCC diagnostic ignored "-Wstringop-overflow"
+#endif // SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY
         auto && [alignment_matrix, index_matrix] =
             this->acquire_matrices(sequence1_size, sequence2_size, this->lowest_viable_score());
+#if SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY
+#    pragma GCC diagnostic pop
+#endif // SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY
 
         compute_matrix(simd_seq1_collection, simd_seq2_collection, alignment_matrix, index_matrix);
 

include/seqan3/core/platform.hpp

@@ -231,7 +231,7 @@ static_assert(sdsl::sdsl_version_major == 3, "Only version 3 of the SDSL is supp
  * \see https://gcc.gnu.org/bugzilla/show_bug.cgi?id=105545
  */
 #ifndef SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY
-#    if SEQAN3_COMPILER_IS_GCC && (__GNUC__ == 12 || __GNUC__ == 13 || __GNUC__ == 14)
+#    if SEQAN3_COMPILER_IS_GCC && (__GNUC__ >= 12)
 #        define SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY 1
 #    else
 #        define SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY 0