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Fix infernal paths
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Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -129,17 +129,17 @@ COPY pyproject.toml setup-env $RNACENTRAL_IMPORT_PIPELINE/
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WORKDIR $RNA
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# Setup environmental variables
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ENV PERL5LIB="/usr/bin/env:$PERL5LIB"
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ENV RIBOINFERNALDIR="$RNA/${INFERNAL_VERSION}/bin"
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ENV RIBOINFERNALDIR="$RNA/infernal-${INFERNAL_VERSION}/bin"
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ENV RIBODIR="$RNA/ribovore"
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ENV RIBOEASELDIR="$RNA/${INFERNAL_VERSION}/bin"
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ENV RIBOEASELDIR="$RNA/infernal-${INFERNAL_VERSION}/bin"
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ENV EPNOPTDIR="$RNA/epn-options"
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ENV EPNOFILEDIR="$RNA/epn-ofile"
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ENV EPNTESTDIR="$RNA/epn-test"
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ENV RIBOTIMEDIR="/usr/bin"
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ENV BIOEASELDIR="$RNA/Bio-Easel/blib/lib:$RNA/Bio-Easel/blib/arch:$RNA/Bio-Easel:$RNA/Bio-Easel/lib"
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ENV PERL5LIB="$BIOEASELDIR:$RIBODIR:$EPNOPTDIR:$EPNOFILEDIR:$EPNTESTDIR:$PERL5LIB"
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ENV PATH="$RNA/${INFERNAL_VERSION}/bin:$PATH"
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ENV PATH="$RNA/infernal-${INFERNAL_VERSION}/bin:$PATH"
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ENV PATH="$RNA/blat_suite:$PATH"
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ENV PATH="$RNA/seqkit:$PATH"
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ENV PATH="$RNACENTRAL_IMPORT_PIPELINE/bin:$PATH"

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