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lines changed Original file line number Diff line number Diff line change @@ -129,17 +129,17 @@ COPY pyproject.toml setup-env $RNACENTRAL_IMPORT_PIPELINE/
129129WORKDIR $RNA
130130# Setup environmental variables
131131ENV PERL5LIB="/usr/bin/env:$PERL5LIB"
132- ENV RIBOINFERNALDIR="$RNA/${INFERNAL_VERSION}/bin"
132+ ENV RIBOINFERNALDIR="$RNA/infernal- ${INFERNAL_VERSION}/bin"
133133ENV RIBODIR="$RNA/ribovore"
134- ENV RIBOEASELDIR="$RNA/${INFERNAL_VERSION}/bin"
134+ ENV RIBOEASELDIR="$RNA/infernal- ${INFERNAL_VERSION}/bin"
135135ENV EPNOPTDIR="$RNA/epn-options"
136136ENV EPNOFILEDIR="$RNA/epn-ofile"
137137ENV EPNTESTDIR="$RNA/epn-test"
138138ENV RIBOTIMEDIR="/usr/bin"
139139ENV BIOEASELDIR="$RNA/Bio-Easel/blib/lib:$RNA/Bio-Easel/blib/arch:$RNA/Bio-Easel:$RNA/Bio-Easel/lib"
140140ENV PERL5LIB="$BIOEASELDIR:$RIBODIR:$EPNOPTDIR:$EPNOFILEDIR:$EPNTESTDIR:$PERL5LIB"
141141
142- ENV PATH="$RNA/${INFERNAL_VERSION}/bin:$PATH"
142+ ENV PATH="$RNA/infernal- ${INFERNAL_VERSION}/bin:$PATH"
143143ENV PATH="$RNA/blat_suite:$PATH"
144144ENV PATH="$RNA/seqkit:$PATH"
145145ENV PATH="$RNACENTRAL_IMPORT_PIPELINE/bin:$PATH"
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