Skip to content

Latest commit

 

History

History
128 lines (128 loc) · 58.9 KB

File metadata and controls

128 lines (128 loc) · 58.9 KB

Demography

BDCHM element variable label machine-readable label datatype unit OMOP concept id as CURIE OMOP UCUM id as CURIE OBA CURIE UCUM unit Text definition
Demography Ethnicity ethnicity EthnicityEnum NONE OMOP:44803968 A person's cultural heritage or ancestry
Demography Race race RaceEnum NONE OMOP:4013886 Self-reported category reflecting an individual's identity and social understanding of race in the United States
Demography Sex sex SexEnum NONE OMOP:3046965 Self-reported category reflecting an individual's biological sex and/or gender identity

MeasurementObservation

BDCHM element variable label machine-readable label datatype unit OMOP concept id as CURIE OMOP UCUM id as CURIE OBA CURIE UCUM unit Text definition
MeasurementObservation 8-epi-PGF2a in urine isoprostane_8_epi_pgf2a decimal pg/mg OMOP:3011888 OMOP:9017 REQUESTED Concentration of urinary 8-epi-prostaglandin F2 alpha - an isoprostane and indicator of oxidative stress
MeasurementObservation Activity LP-PLA2 in blood lppla2_act decimal nmol/min/mL OMOP:36305170 OMOP:44777635 REQUESTED nmol/min/mL Measurement of the activity of the Lp-PLA2 (lipoprotein-associated phospholipase A2) enzyme in serum or plasma. This enzyme is associated with "bad" cholesterol.
MeasurementObservation AHI Apnea-Hypopnea Index apnea_hypop_index decimal events/hr OMOP:37396400 REQUESTED Measurement used to diagnose and assess the severity of sleep apnea. It is calculated by counting the number of apneas and hypopneas that occur per hour of sleep.
MeasurementObservation Albumin creatinine ratio in urine albumin_creatinine decimal mg/g OMOP:4154347 OMOP:9511 REQUESTED mg/g{creat} Measurement of the ratio of albumin to creatinine in urine. Also known as uACR.
MeasurementObservation Albumin in blood albumin_bld decimal g/dL OMOP:2212186 OMOP:8713 OBA:2050068 g/dL Measurement of albumin in blood serum
MeasurementObservation Alcohol alcohol_servings integer servings per week OMOP:35609491 REQUESTED {#}/wk Servings of alcohol consumed per week
MeasurementObservation ALT SGPT alt_sgpt decimal IU/L OMOP:4146380 OMOP:8923 OBA:2050062 [IU]/L Concentration of ALT/SGPT in the blood. ALT, or alanine transaminase, is the same as SGPT, which stands for serum glutamic-pyruvic transaminase. Typically measured in serum or plasma.
MeasurementObservation AST SGOT ast_sgot decimal IU/L OMOP:4263457 OMOP:8923 REQUESTED [IU]/L Concentration of AST/SGOT in blood. AST (aspartate aminotransferase), also known as SGOT (Serum Glutamic Oxaloacetic Transaminase), is typically measured in serum or plasma.
MeasurementObservation basophils count basophil_ncnc_bld decimal x10E3/uL OMOP:3006315 OMOP:8848 OBA:VT0002607 10*3/uL Concentration of basophil cells in whole blood
MeasurementObservation Bilirubin Conjugated Direct bilirubin_con decimal mg/dL OMOP:44805650 OMOP:8840 REQUESTED mg/dL Concentration of conjugated (or direct) bilirubin in blood, typically measured in serum or plasma
MeasurementObservation Bilirubin total bilirubin_tot decimal mg/dL OMOP:4230543 OMOP:8840 REQUESTED mg/dL Concentration of total bilirubin in blood, typically measured in serum or plasma
MeasurementObservation Bilirubin Unconjugated Indirect bilirubin_uncon decimal mg/dL OMOP:4018181 OMOP:8840 OBA:VT0001569 mg/dL Concentration of unconjugated (or indirect) bilirubin in blood, typically measured in serum or plasma
MeasurementObservation BMI bmi decimal kg/m2 OMOP:3038553 OMOP:9531 OBA:2045455 kg/m2 Also known as body mass index: ratio of a person's weight in kilos to the square of their height in meters
MeasurementObservation BNP bnp decimal pg/mL OMOP:4307029 OMOP:8845 OBA:2045303 pg/mL Concentration of BNP in blood, typically measured in plasma or whole blood. Also known as B-type natriuretic peptide, a hormone.
MeasurementObservation Body weight bdy_wgt decimal kg OMOP:4099154 OMOP:9529 OBA:VT0001259 kg Mass of a person
MeasurementObservation BUN bun decimal mg/dL OMOP:4017361 OMOP:8840 OBA:VT0005265 mg/dL Concentration of blood urea nitrogen in blood, typically measured in serum or plasma
MeasurementObservation BUN Creatinine ratio bun_creatinine decimal ratio OMOP:4112223 OMOP:8523 REQUESTED {ratio} Ratio of blood urea nitrogen (BUN) to creatinine in blood, typically measured in serum or plasma
MeasurementObservation c-reactive protein CRP crp decimal mg/L OMOP:4208414 OMOP:8751 REQUESTED mg/L Concentration of c-reactive protein (CRP) in blood, typically measured in serum or plasma
MeasurementObservation CAC Score cac_score decimal Agatston unit OMOP:42872742 REQUESTED {score} The Coronary Artery Calcium Score is a measure of the amount of calcium in the arteries of the heart. Measured from a CT Scan.
MeasurementObservation CAC volume cac_volume decimal Hounsfield units (HU) OMOP:? OMOP:9322 REQUESTED Volume of coronarty artery calcium in the arteries of the heart. Measured by CT Scan.
MeasurementObservation Carotid IMT carotid_imt decimal mm OMOP:4138462 OMOP:8588 OBA_2050108 or OBA_2050107 mm Carotid intima-media thickness (IMT) measures the thickness of the inner two layers (intima and media layers) of the carotid artery walls - measured by ultrasound
MeasurementObservation CD40 in blood cd40 decimal pg/mL OMOP:4209737 OMOP:8845 OBA:2052305 pg/mL Concentration of CD40 (Cluster of differentiation antigen 40) in blood, typically measured in serum or plasma
MeasurementObservation Chloride in blood chloride_bld decimal mmol/L OMOP:4188066 OMOP:8753 OBA:VT0003018 mmol/L Concentration of chloride in blood, also known as serum chloride
MeasurementObservation Cigarette smoking smoking BaseEnum NONE OMOP:43054909 REQUESTED Smoking status
MeasurementObservation Creatinine in blood creat_bld decimal mg/dL OMOP:2212294 OMOP:8840 OBA:2050096 mg/dL Concentration of creatinine in blood, typically measured in serum or plasma
MeasurementObservation Creatinine in urine creat_urin decimal mg/dL OMOP:3007081 OMOP:8840 OBA:VT0010540 mg/dL Concentration of creatinine in urine
MeasurementObservation Cystatin C in blood cysc_bld decimal mg/dL OMOP:4136584 OMOP:8840 OBA:2052375 mg/dL Concentration of cystatin C in blood, typically measured in serum or plasma
MeasurementObservation D-Dimer d_dimer decimal mg/L FEU OMOP:37393605 OMOP:8751 REQUESTED mg/L Concentration of D-dimer in blood, can be measured in whole blood or plasma
MeasurementObservation Diastolic blood pressure bp_diastolic decimal mmHg OMOP:4154790 OMOP:8876 REQUESTED mm[Hg] Measurement of pressure in your arteries when your heart is at rest between beats, the bottom number in a blood pressure reading
MeasurementObservation E-selectin in blood eselectin decimal ng/ML OMOP:3010372 OMOP:8842 OBA:2052778 ng/mL Concentration of E-selectin in blood, typically measured in serum or plasma
MeasurementObservation EGFR egfr decimal mL/min/1.73m2 OMOP:37208635 OMOP:720870 REQUESTED mL/min/{1.73_m2} Stands for estimated glomerular filtration rate - calculated from creatinine concentration, age, sex, and body size.
MeasurementObservation Eosinophils count eosinophil_ncnc_bld decimal x10E3/uL OMOP:3013115 OMOP:8848 OBA:VT0002602 10*3/uL Concentration of eosinophil cells in whole blood
MeasurementObservation Erythrocyte Sed Rate ery_sed_rate decimal mm/hr OMOP:4212065 OMOP:8752 OBA:2045235 mm/h Measurement of how quickly red blood cells (erythrocytes) settle to the bottom of a test tube in one hour. Also known as ESR
MeasurementObservation Factor VII factor_7 decimal ug/mL OMOP:4217630 OMOP:8859 OBA:2041535 ug/mL Concentration of Factor VII in blood, typically measured in plasma. Also known as FVII and proconvertin
MeasurementObservation Fasting blood glucose fast_gluc_bld decimal mg/dL OMOP:4156660 OMOP:8840 REQUESTED mg/dL Concentration of glucose in blood after not eating or drinking (except water) for a set period, typically 8-12 hours
MeasurementObservation Ferritin ferritin decimal ng/mL OMOP:4176561 OMOP:8842 OBA:VT0010513 ng/mL Concentration of ferritin in blood, typically measured in serum or plasma
MeasurementObservation FEV1 - Forced Expiratory Volume in 1 sec fev1 decimal L OMOP:4241837 OMOP:8519 REQUESTED L Volume of air a person can exhale forcefully in one second
MeasurementObservation FEV1 FVC fev1_fvc decimal ratio OMOP:3011505 OMOP:8523 REQUESTED {ratio} Ratio of the volume of air a person can exhale forcefully in one second (FEV1) to the total volume of air a person can exhale from their lungs after taking the deepest possible breath and then exhaling as forcefully and as completely as possible (FVC)
MeasurementObservation Fibrinogen fibrin decimal pg/mL OMOP:4094436 OMOP:8845 OBA:0000061 pg/mL Concentration of fibrinogen in blood, typically measured in plasma
MeasurementObservation Fruits fruit_serving integer servings per week OMOP:21493059 REQUESTED {#}/wk Servings of fruits consumed per week
MeasurementObservation FVC - Forced Vital Capacity fvc decimal L OMOP:4176265 OMOP:8519 REQUESTED L Total volume of air a person can exhale from their lungs after taking the deepest possible breath and then exhaling as forcefully and as completely as possible
MeasurementObservation GCS Eye gcs_eye BaseEnum NONE OMOP:3016335 OMOP:44777566
MeasurementObservation GCS Motor gcs_motor BaseEnum NONE OMOP:3008223 OMOP:44777566
MeasurementObservation GCS Verbal gcs_verbal BaseEnum NONE OMOP:3009094 OMOP:44777566
MeasurementObservation GFR gfr decimal mL/min/1.73 m2 OMOP:4213477 OMOP:720870 OBA:0003747 mL/min/{1.73_m2} Stands for glomerular filtration rate: a measure of how much blood passes through the glomeruli
MeasurementObservation Glucose in blood glucose_bld decimal mg/dL OMOP:4149519 OMOP:8840 OBA:VT0000188 mg/dL Concentration of glucose in blood, can be measured in whole blood, serum, or plasma
MeasurementObservation HDL hdl decimal mg/dL OMOP:4076704 OMOP:8840 OBA:VT0000184 mg/dL Concentration of high-density lipoprotein (HDL) in blood, typically measured in serum
MeasurementObservation Heart rate hrtrt integer bpm OMOP:3027018 OBA:1001087 Number of times a heart beats per minute - also known as pulse rate
MeasurementObservation Height hgt decimal cm OMOP:607590 OMOP:8582 OBA:VT0001253 cm Measure of the vertical distance of a standing person from head to foot
MeasurementObservation Hematocrit hemat decimal ratio OMOP:4151358 OBA:2045381 The percentage of whole blood volume that consists of red blood cells - also known as packed cell volume (PCV)
MeasurementObservation Hemoglobin hemo decimal g/dL OMOP:4094758 OMOP:8713 OBA:2060175 g/dL Concentration of hemoglobin (Hb) in whole blood
MeasurementObservation Hemoglobin A1c hemo_a1c decimal percent OMOP:4184637 REQUESTED % Percentage of hemoglobin in your red blood cells that has glucose attached to it. Also known as HbA1c
MeasurementObservation Hip circumference hip_circ decimal cm OMOP:4111665 OMOP:8582 OBA:1000032 cm Distance measurement taken around the fullest part of the hips
MeasurementObservation ICAM1 in blood icam decimal ng/ML OMOP:4284103 OMOP:8842 REQUESTED ng/mL Concentration of Intercellular adhesion molecule 1 (ICAM-1) in blood, typically measured in serum or plasma
MeasurementObservation Insulin in blood insulin_blood decimal pmol/L OMOP:4060873 OMOP:8729 OBA:2060174 pmol/L Concentration of insulin in blood, typically measured in serum or plasma
MeasurementObservation Interleukin 1 beta in blood il1_beta decimal pg/mL OMOP:3001804 OMOP:8845 REQUESTED pg/mL Concentration of Interleukin-1 beta (IL-1β) in blood, typically measured in serum or plasma
MeasurementObservation Interleukin 10 in blood il10 decimal pg/mL OMOP:3004578 OMOP:8845 REQUESTED pg/mL Concentration of Interleukin-1 beta (IL-10) in blood, typically measured in serum or plasma
MeasurementObservation Interleukin 18 in blood il18 decimal pg/mL OMOP:3043144 OMOP:8845 REQUESTED pg/mL Concentration of Interleukin-1 beta (IL-18) in blood, typically measured in serum or plasma
MeasurementObservation interleukin 6 in blood il6 decimal pg/mL OMOP:4332015 OMOP:8845 OBA:2052890 pg/mL Concentration of Interleukin-1 beta (IL-6) in blood, typically measured in serum or plasma
MeasurementObservation Lactate Dehydrogenase LDH lactate_dehyd decimal U/L OMOP:4012918 OMOP:8645 OBA:VT0010477 Concentration of lactate dehydrogenase (LDH) in blood, typically in serum or plasma
MeasurementObservation Lactate in blood lactate_blood decimal mmol/L OMOP:1246795 OBA:VT0010616 Concentration of lactate in blood, typically measured in whole blood or plasma
MeasurementObservation LDL ldl decimal mg/dL OMOP:4331302 OMOP:8840 OBA:VT0000181 mg/dL Concentration of low-density lipoprotein (LDL) in blood, typically measured in serum
MeasurementObservation Lymphocytes count lympho_ct decimal x10E3/uL OMOP:37208689 OMOP:8848 OBA:VT0000217 10*3/uL Concentration of lymphocytes in whole blood
MeasurementObservation Lymphocytes percent lympho_pct decimal percent of total leukocytes OMOP:37208690 OMOP:8554 REQUESTED % Percent of total leukocytes that are lymphocytes
MeasurementObservation Mass LP-PLA2 in blood lppla2_mass decimal ng/mL OMOP:3041450 OMOP:8842 REQUESTED ng/mL Concentration of Lp-PLA2 (lipoprotein-associated phospholipase A2) enzyme in serum or plasma.
MeasurementObservation MCP1 in blood mcp1 decimal pg/mL OMOP:1617307 OMOP:8845 OBA:2052436 pg/mL Concentration of Monocyte Chemoattractant Protein-1 (MCP-1), also known as CCL2, in blood, typically in serum or plasma
MeasurementObservation Mean arterial pressure mn_art_pres decimal mmHg OMOP:37168599 OMOP:8876 OBA:VT2000000 mm[Hg] Average pressure in your arteries throughout one complete cardiac cycle, also known as MAP
MeasurementObservation mean corpuscular hemoglobin mch decimal pg/cell OMOP:37398674 OMOP:8704 OBA:2045301 pg/{cell} Average amount of hemoglobin in each red blood cell, also known as MCH
MeasurementObservation mean corpuscular hemoglobin concentration mchc decimal g/dL OMOP:37393850 OMOP:8840 REQUESTED mg/dL Average concentration of hemoglobin within a single red blood cell, also known as MCHC
MeasurementObservation mean corpuscular volume mcv decimal um3 OMOP:37393851 OMOP:8583 OBA:0003460 fL Average size/volume of a red blood cell, also known as MCV
MeasurementObservation mean platelet volume pmv decimal fL OMOP:37397923 OMOP:8583 OBA:0003277 fL Average size/volume of a platelet, also known as MPV
MeasurementObservation MMP9 in blood mmp9 decimal ng/mL OMOP:40761106 OMOP:8842 OBA:2052397 ng/mL Concentration of Matrix Metalloproteinase-9 (MMP-9) in blood, typically measured in serum or plasma
MeasurementObservation Myeloperoxidase in blood mpo decimal ng/mL OMOP:1988928 OMOP:8842 OBA:2052389 ng/mL Concentration of Myeloperoxidase (MPO) in blood, typically measured in plasma or serum
MeasurementObservation Neutrophils count neutro_ct decimal x10E3/uL OMOP:37208699 OMOP:8848 OBA:VT0000222 10*3/uL Concentration of neutrophil cells in whole blood
MeasurementObservation Neutrophils percent neutro_pct decimal percent of total leukocytes OMOP:37208698 REQUESTED % Percent of total leukocytes that are neutrophils
MeasurementObservation NT pro BNP nt_bnp decimal pg/mL OMOP:4189511 OMOP:8845 OBA:2045303 pg/mL Concentration of NT-proBNP in blood, typically measured in serum or plasma. Also known as N-terminal prohormone of brain natriuretic peptide
MeasurementObservation Osteoprotegerin in blood opg decimal ng/mL OMOP:1552124 OMOP:8842 REQUESTED ng/mL Concentration of Osteoprotegerin (OPG) in blood, typically measured in serum or plasma
MeasurementObservation P-selectin in blood pselectin decimal ng/mL OMOP:3007356 OMOP:8842 OBA:2052701 ng/mL Concentration of P-selectin in blood, typicall measured in plasma
MeasurementObservation pH of blood ph_blood decimal pH OMOP:3010421 OMOP:8482 OBA:2045409 [pH] pH of whole blood
MeasurementObservation Platelet count platelet_ct decimal x10E3/uL OMOP:4267147 OMOP:8848 Same as platelet quantity? 10*3/uL Concentration of platelets in whole blood
MeasurementObservation Potassium in blood potassium decimal mmol/L OMOP:4245152 OMOP:8753 OBA:VT0002668 mmol/L Concentration of potassium in blood, typically measured in whole blood or serum
MeasurementObservation PR interval pr_ekg decimal ms OMOP:4274406 OMOP:9593 REQUESTED ms Time it takes for electrical impulses to travel from the atria to the ventricles of the heart. Measured using ECG/EKG
MeasurementObservation Procalcitonin procal decimal ng/mL OMOP:44791466 OMOP:8842 REQUESTED ng/mL Concentration of procalcitonin (PCT) in blood, can be measured in serum, plasma, or whole blood
MeasurementObservation QRS interval qrs_ekg decimal ms OMOP:4273021 OMOP:9593 OBA:1001086 ms Time that elapses from the beginning of the Q wave to the end of the S wave. Measured using ECG/EKG
MeasurementObservation QT interval qt_ekg decimal s OMOP:4273023 OMOP:8555 REQUESTED Time it takes for the ventricles of the heart to depolarize and repolarize. Measured using ECG/EKG
MeasurementObservation Red blood cell count rdbld_ct decimal millions/uL OMOP:4030871 OMOP:8815 OBA:VT0001586 Concentration of red blood cells in whole blood
MeasurementObservation Red cell distribution width rdw decimal fL OMOP:37397924 REQUESTED fL Measure of the variation in the size and volume of red blood cells, also known as RDW. SD or CV?
MeasurementObservation Respiratory rate resp_rt decimal breaths/min OMOP:4313591 REQUESTED Number of breaths a person takes in one minute
MeasurementObservation Sleep hours sleep_duration_daily decimal hours OMOP:40768653 OBA:2040171 Cumulative amount of time spent sleeping each night
MeasurementObservation Sodium in blood sodium_blood decimal mmol/L OMOP:4097430 OMOP:8753 OBA:VT0001776 Concentration of sodium in blood, typically measured in serum or plasma
MeasurementObservation Sodium intake sodium_intak decimal mg/day OMOP:606729 OMOP:8909 REQUESTED Mass of sodium consumed by an individual per day
MeasurementObservation SpO2 spo2 decimal percent OMOP:4020553 OBA:2045443 Percentage of oxygen-carrying hemoglobin in the blood compared to the total amount of hemoglobin. Also known as oxygen saturation.
MeasurementObservation Temperature bdy_temp decimal C OMOP:4302666 OBA:VT0005535 An individual's internal body temperature
MeasurementObservation TNFa in blood tnfa decimal pg/mL OMOP:3004282 OMOP:8845 OBA:2051979 Concentration of TNF in blood, typically measured in serum or plasma. Also known as TNF-alpha, TNFα, and tumor necrosis factor
MeasurementObservation TNFa-R1 in blood tnfa_r1 decimal ng/mL OMOP:46235360 OMOP:8842 OBA:2051975 Concentration of TNF receptor 1 in blood, typically measured in serum or plasma. Also known as TNFR1, TNFRSF1A, CD120a, and tumor necrosis factor receptor 1
MeasurementObservation TNFR2 in blood tnfr2 decimal ng/mL OMOP:37543055 OMOP:8842 REQUESTED Concentration of TNFR2 in blood, typically measured in serum or plasma. Also known as tumor Necrosis Factor Receptor 2
MeasurementObservation Total cholesterol in blood tot_chol_bld decimal mg/dL OMOP:4008265 OMOP:8840 OBA:VT0000180 Concentration of all cholesterol in your blood, including both HDL and LDL
MeasurementObservation Triglycerides in blood triglyc_bld decimal mg/dL OMOP:4032789 OMOP:8840 OBA:VT0002644 Concentration of triglycerides in blood, typically measured in serum or plasma
MeasurementObservation Troponin all types troponin decimal ng/mL OMOP:4021291 OMOP:8842 REQUESTED Concentration of all types of troponin in blood
MeasurementObservation Vegetables vege_serving integer servings per week OMOP:4042886 REQUESTED Servings of vegetables consumed per week
MeasurementObservation von Willebrand factor willeb_fac decimal IU/dL OMOP:4252203 OMOP:9332 OBA:2052741 Concentration of von willebrand factor in blood
MeasurementObservation Waist circumference waist_circ decimal cm OMOP:4172830 OMOP:8582 OBA:1001085 Distance measurement taken around the waist, just above the hip bone
MeasurementObservation Waist-hip ratio waist_hip decimal ratio OMOP:4087501 OMOP:8523 REQUESTED Ratio of the circumference of the waist to the circumference of the hips
MeasurementObservation White blood cell count whtbld_ct decimal x10E3/uL OMOP:4298431 OMOP:8848 OBA:VT0000217 10*3/uL Concentration of white blood cells in whole blood
MeasurementObservation Albumin in urine albumin_urine decimal mg/mL OMOP:2212188 OMOP:8861 OBA:VT0002871 Concentration of albumin in urine
MeasurementObservation CESD score cesd_score integer NONE OMOP:36303297 OMOP:44777566 REQUESTED Score from a self-report questionnaire, the CES-D (Center for Epidemiological Studies Depression Scale)
MeasurementObservation Factor VIII factor_8 decimal NONE OMOP:4148587 OBA:2041536 Measure of the amount of FVIII activity in a volume of plasma
MeasurementObservation Fasting lipids fast_lipids decimal mg/dL OMOP:4150326 REQUESTED Concentration of lipids in blood after not eating or drinking (except water) for a set period, typically 8-12 hours
MeasurementObservation Medication adherence med_adher BaseEnum NONE OMOP:4056965 REQUESTED
MeasurementObservation Medication use med_use BaseEnum NONE OMOP:3021806 REQUESTED
MeasurementObservation Pacemaker implant status pacem_stat BaseEnum NONE OMOP:45772840
MeasurementObservation Sleep apnea status slp_ap_stat BaseEnum NONE OMOP:313459
MeasurementObservation Systolic blood pressure bp_systolic integer mmHg OMOP:4152194 OMOP:8876 REQUESTED Measurement of pressure in your arteries when your heart pumps blood, the top number in a blood pressure reading
MeasurementObservation monocytes count monocyte_ncnc_bld decimal cells/uL OMOP:3001604 OBA:VT0000223 10*3/uL Concentration of monocyte cells in whole blood

SdohObservation

BDCHM element variable label machine-readable label datatype unit OMOP concept id as CURIE OMOP UCUM id as CURIE OBA CURIE UCUM unit Text definition
SdohObservation Education level edu_lvl BaseEnum NONE OMOP:4022643 Highest level of education that an individual has completed
SdohObservation Family income fam_income BaseEnum NONE OMOP:4076114 The sum of the income of all family members 15 years and older living in the household