Finish the test-combining experiment

[sandypreiss]

Run an experiment using the combined tests feature added in #26. The experiment should generate a combined FIT-blood test, then run basic compliance scenarios using FIT, blood, and combined.

[sandypreiss]

@korourke5, I will give you more detail on what has been done so far before you get started on this.

[sandypreiss]

After digging into what has been done so far, I think it will be best to start from scratch. Here are some steps to follow.

• Start a branch from experiment-template
• Manually add blood test parameters to experiment/parameters.json. You can grab these from another experiment branch that included the blood test, eg exp-test-patterns.
• Run experiment/combine_tests.py to generate FIT-blood combination tests both in serial and parallel. Lmk if you want guidance on how to use that script's CLI arguments.
• Edit the prepare.py script so it also runs the same basic scenarios on the combined FIT-blood tests. combine_tests.py simply adds combined tests to the routine_tests param in parameters.json. So combined tests can be handled the same as any other test. This means your edits can be very simple - just add a scenarios.append() call for each combined test in the for scenario, screening_rate in compliance_scenarios.items(): block.

[korourke5]

Hi Sandy. I updated the code but was not entirely confident on the prepare.py changes. I think I may have too many scenarios being created. Do we only want the two parallel and serial scenarios and what compliances did we want to test here?

[sandypreiss]

Finished in #46