More github actions.

Author: grahamgower

.github/workflows/docs.yaml

@@ -37,7 +37,7 @@ jobs:
         run: make -C docs
 
       - name: move docs
-        if: (!github.event.pull_request)
+        if: github.event_name == 'push'
         run: |
           cp docs/is_new_stable.py /tmp/
           mv docs/_build/html /tmp/${GITHUB_REF_NAME}
@@ -49,9 +49,9 @@ jobs:
           ln -s ${GITHUB_REF_NAME} latest
 
       - name: check if tag is new stable
-        if: ${{ github.ref_type == 'tag' }}
+        if: github.event_name == 'push' && github.ref_type == 'tag'
         run: |
-          python -m pip install packaging==21.3
+          python -m pip install packaging
           if [ -f stable ]; then
             export STABLE=$(readlink stable)
           else
@@ -66,7 +66,7 @@ jobs:
           fi
 
       - name: commit to gh-pages
-        if: (!github.event.pull_request)
+        if: github.event_name == 'push'
         uses: stefanzweifel/git-auto-commit-action@v4
         with:
           commit_message: deploy ${{ github.ref }}

.github/workflows/tests.yaml

@@ -45,7 +45,7 @@ jobs:
 
       - name: install bcftools
         run: |
-          # The tests call "bgzip" and "bcftools index".
+          # The tests call "bgzip" and "bcftools".
           if [ "$RUNNER_OS" == "Linux" ]; then
             # Ubuntu keeps bgzip in the tabix package.
             sudo apt-get update

.github/workflows/wheel.yaml

@@ -0,0 +1,86 @@
+name: wheel
+
+on:
+  push:
+    tags:
+      - '*'
+  release:
+    types: [published]
+
+jobs:
+  wheel_build:
+    runs-on: ubuntu-18.04
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: build wheel
+        run: |
+          pip install build twine
+          python -m build
+          twine check dist/*
+
+      - name: upload wheel
+        uses: actions/upload-artifact@v2
+        with:
+          name: wheel-and-sdist
+          path: dist/
+
+  wheel_test:
+    runs-on: ${{ matrix.os }}
+    needs: ['wheel_build']
+    defaults:
+      run:
+        shell: bash
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python-version: [3.7, 3.8, 3.9]
+
+    steps:
+      - name: download wheel
+        uses: actions/download-artifact@v2
+        with:
+          name: wheel-and-sdist
+          path: dist/
+
+      - name: setup python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: install
+        run: pip install dist/*.whl
+
+      - name: test
+        run: |
+          python -c "import dinf"
+          dinf --version
+
+  pypi_upload:
+    runs-on: ubuntu-18.04
+    needs: ['wheel_test']
+    steps:
+      - name: download wheel
+        uses: actions/download-artifact@v2
+        with:
+          name: wheel-and-sdist
+          path: dist/
+
+      - name: publish to test.pypi.org
+        if: github.event_name == 'push' && github.ref_type == 'tag'
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          user: __token__
+          password: ${{ secrets.TEST_PYPI_API_TOKEN }}
+          repository_url: https://test.pypi.org/legacy/
+
+      - name: publish to PyPI
+        if: github.event_name == 'release'
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_API_TOKEN }}

pyproject.toml

@@ -0,0 +1,2 @@
+[build-system]
+requires = ["setuptools>=40.8.0", "wheel", "setuptools_scm"]

setup.cfg

@@ -1,6 +1,7 @@
 [metadata]
 name = dinf
 author = Graham Gower
+author_email = [email protected]
 license = MIT
 description = discriminator-based inference of population parameters
 long_description = file: README.md
@@ -35,7 +36,7 @@ install_requires =
     jax
     flax
     optax
-    msprime >= 1.0.3  # performance improvements
+    msprime >= 1.0.4
     demes
 setup_requires =
     setuptools