-
Notifications
You must be signed in to change notification settings - Fork 1
Expand file tree
/
Copy pathCMD.py
More file actions
149 lines (127 loc) · 6.31 KB
/
CMD.py
File metadata and controls
149 lines (127 loc) · 6.31 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
```
Microsoft Windows [Version 10.0.19042.1052]
(c) Microsoft Corporation. All rights reserved.
C:\Users\DELL>cd Opendiagram
C:\Users\DELL\openDiagram>git pull
remote: Enumerating objects: 29, done.
remote: Counting objects: 100% (29/29), done.
remote: Compressing objects: 100% (9/9), done.
remote: Total 20 (delta 14), reused 16 (delta 10), pack-reused 0
Unpacking objects: 100% (20/20), 26.65 KiB | 16.00 KiB/s, done.
From https://github.com/petermr/openDiagram
96e060761..7235fb9ad master -> origin/master
Updating 96e060761..7235fb9ad
Fast-forward
physchem/python/pyami.py | 263 ++++++++---
physchem/python/xml_lib.py | 5 +-
physchem/resources/oil26/files/xml_files.txt | 677 ++++++++++++++++++++++++++-
3 files changed, 889 insertions(+), 56 deletions(-)
C:\Users\DELL\openDiagram>cd..
C:\Users\DELL>cd CEVOpen
C:\Users\DELL\CEVOpen>git pull
remote: Enumerating objects: 30, done.
remote: Counting objects: 100% (30/30), done.
remote: Compressing objects: 100% (18/18), done.
remote: Total 23 (delta 12), reused 5 (delta 4), pack-reused 0
Unpacking objects: 100% (23/23), 1.16 MiB | 78.00 KiB/s, done.
From https://github.com/petermr/CEVOpen
4d3a8f811b..90713de5eb master -> origin/master
Updating 4d3a8f811b..90713de5eb
Fast-forward
classification/MLcode.ipynb | 5882 +
classification/README.md | 29 +
dictionary/eoCompound/plant_compound.xml | 105 +-
dictionary/eoGene/eo_Gene_identifier.xml | 159795 ++++++++++++++++++++++++++++
4 files changed, 165707 insertions(+), 104 deletions(-)
create mode 100644 classification/MLcode.ipynb
create mode 100644 dictionary/eoGene/eo_Gene_identifier.xml
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>
C:\Users\DELL\CEVOpen>cd ..
C:\Users\DELL>cd Dcitionary
The system cannot find the path specified.
C:\Users\DELL>cd dcitionary
The system cannot find the path specified.
C:\Users\DELL>cd dictionary
C:\Users\DELL\dictionary>git pull
remote: Enumerating objects: 24, done.
remote: Counting objects: 100% (24/24), done.
remote: Compressing objects: 100% (14/14), done.
remote: Total 24 (delta 13), reused 21 (delta 10), pack-reused 0
Unpacking objects: 100% (24/24), 129.17 KiB | 73.00 KiB/s, done.
From https://github.com/petermr/dictionary
0087444b..cb09f20d main -> origin/main
Updating 0087444b..cb09f20d
Fast-forward
...s_committee_frontiers_spacy_entities_column.csv | 479 ++++++++++++++++++++
.../ethics_statement_frontiers_1000_spacy.csv | 489 +++++++++++++++++++++
...cs_statement_frontiers_10_labelled_entities.csv | 1 -
...s_statement_frontiers_frontiers_50_scispacy.csv | 50 +++
...hics_statement_frontiers_frontiers_50_spacy.csv | 50 +++
.../ethics_statement_generic.ipynb | 17 +-
.../ethics_statement_generic.py | 39 +-
.../ethics_statement_ngram.ipynb | 217 +++++++++
.../ethics_statement_project.md | 98 +++--
9 files changed, 1396 insertions(+), 44 deletions(-)
create mode 100644 ethics_statement_project/ethics_committee_frontiers_spacy_entities_column.csv
create mode 100644 ethics_statement_project/ethics_statement_frontiers_1000_spacy.csv
delete mode 100644 ethics_statement_project/ethics_statement_frontiers_10_labelled_entities.csv
create mode 100644 ethics_statement_project/ethics_statement_frontiers_frontiers_50_scispacy.csv
create mode 100644 ethics_statement_project/ethics_statement_frontiers_frontiers_50_spacy.csv
create mode 100644 ethics_statement_project/ethics_statement_ngram.ipynb
C:\Users\DELL\dictionary>cd
C:\Users\DELL\dictionary
C:\Users\DELL\dictionary>cd..
C:\Users\DELL>cd pygetpapers
C:\Users\DELL\pygetpapers>git pull
remote: Enumerating objects: 69, done.
remote: Counting objects: 100% (69/69), done.
remote: Compressing objects: 100% (11/11), done.
remote: Total 48 (delta 34), reused 47 (delta 33), pack-reused 0
Unpacking objects: 100% (48/48), 87.97 KiB | 17.00 KiB/s, done.
From https://github.com/petermr/pygetpapers
5cbf751..d72c62c main -> origin/main
Updating 5cbf751..d72c62c
Fast-forward
build/lib/pygetpapers/arxiv.py | 24 +-
build/lib/pygetpapers/config.ini | 2 +-
build/lib/pygetpapers/crossref.py | 1 -
build/lib/pygetpapers/download_tools.py | 28 +-
build/lib/pygetpapers/europe_pmc.py | 403 +++++++++++++++
build/lib/pygetpapers/pygetpapers.py | 550 ++++-----------------
dist/pygetpapers-0.0.4.5-py3.7.egg | Bin 38447 -> 0 bytes
dist/pygetpapers-0.0.4.6-py3.7.egg | Bin 38556 -> 0 bytes
dist/pygetpapers-0.0.4.7-py3.7.egg | Bin 38501 -> 0 bytes
dist/pygetpapers-0.0.4.8-py3.7.egg | Bin 0 -> 39465 bytes
dist/pygetpapers-0.0.4.9-py3.7.egg | Bin 0 -> 39493 bytes
docs/source/arxiv.rst | 7 +
docs/source/conf.py | 2 +-
docs/source/crossref.rst | 7 +
docs/source/index.rst | 2 +
pygetpapers.egg-info/PKG-INFO | 2 +-
.../__pycache__/download_tools.cpython-37.pyc | Bin 12664 -> 13705 bytes
pygetpapers/__pycache__/europe_pmc.cpython-37.pyc | Bin 4330 -> 17633 bytes
pygetpapers/__pycache__/pygetpapers.cpython-37.pyc | Bin 22595 -> 9910 bytes
pygetpapers/arxiv.py | 24 +-
pygetpapers/config.ini | 2 +-
pygetpapers/crossref.py | 1 -
pygetpapers/download_tools.py | 28 +-
pygetpapers/europe_pmc.py | 403 +++++++++++++++
pygetpapers/pygetpapers.py | 550 ++++-----------------
25 files changed, 1090 insertions(+), 946 deletions(-)
delete mode 100644 dist/pygetpapers-0.0.4.5-py3.7.egg
delete mode 100644 dist/pygetpapers-0.0.4.6-py3.7.egg
delete mode 100644 dist/pygetpapers-0.0.4.7-py3.7.egg
create mode 100644 dist/pygetpapers-0.0.4.8-py3.7.egg
create mode 100644 dist/pygetpapers-0.0.4.9-py3.7.egg
create mode 100644 docs/source/arxiv.rst
create mode 100644 docs/source/crossref.rst
C:\Users\DELL\pygetpapers>
```