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Merge pull request #443 from RcppCore/feature/switch-to-usr-bin-env-r
Feature/switch to usr bin env r (closes #440)
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‎ChangeLog

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2016-03-04 Dirk Eddelbuettel <[email protected]>
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* inst/unitTests/runit.Function.R: Switched to '/usr/bin/env r'
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* inst/unitTests/runit.table.R: Idem
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* inst/unitTests/runit.as.R: Idem
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* inst/unitTests/runit.Date.R: Idem
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* inst/unitTests/runit.misc.R: Idem
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* inst/unitTests/runit.Language.R: Idem
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* inst/unitTests/runit.subset.R: Idem
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* inst/unitTests/runit.wrap.R: Idem
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* inst/unitTests/runit.sugar.R: Idem
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* inst/unitTests/runit.na.R: Idem
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* inst/unitTests/runit.String.R: Idem
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* inst/unitTests/runit.Vector.R: Idem
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* inst/unitTests/runit.environments.R: Idem
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* inst/unitTests/runit.Reference.R: Idem
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* inst/unitTests/runit.Matrix.R: Idem
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* inst/unitTests/runit.client.package.R: Idem
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* inst/unitTests/runit.binary.package.R: Idem
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* inst/unitTests/runit.support.R: Idem
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* inst/unitTests/runit.S4.R: Idem
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* inst/unitTests/runit.RObject.R: Idem
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* inst/unitTests/runit.modref.R: Idem
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* inst/unitTests/runit.InternalFunctionCPP11.R: Idem
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* inst/unitTests/runit.attributes.R: Idem
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* inst/unitTests/runit.sugar.var.R: Idem
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* inst/unitTests/runit.Module.R: Idem
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* inst/unitTests/runit.XPTr.R: Idem
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* inst/unitTests/runit.Module.client.package.R: Idem
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* inst/unitTests/runit.stats.R: Idem
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* inst/unitTests/runit.rmath.R: Idem
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* inst/unitTests/runit.DataFrame.R: Idem
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* inst/unitTests/runit.wstring.R: Idem
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* inst/unitTests/runit.InternalFunction.R: Idem
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2016-03-03 Dirk Eddelbuettel <[email protected]>
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* inst/examples/FastLM/benchmarkLongley.r: Switched to '/usr/bin/env r'
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* inst/examples/FastLM/fastLMviaArmadillo.r: Idem
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* inst/examples/FastLM/fastLMviaGSL.r: Idem
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* inst/examples/FastLM/lmArmadillo.R: Idem
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* inst/examples/FastLM/lmGSL.R: Idem
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* inst/examples/FastLM/benchmark.r: Idem
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* inst/examples/ConvolveBenchmarks/exampleRCode.r: Idem
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2016-02-27 Dirk Eddelbuettel <[email protected]>
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* inst/examples/RcppInline/RcppInlineWithLibsExamples.r: Switched to
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using '/usr/bin/env r', switch to using 'cxxfunction' and RcppGSL plugin
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* inst/examples/RcppInline/external_pointer.r: Switched to '/usr/bin/env r'
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* inst/examples/RcppInline/RcppInlineExample.r: Idem
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* inst/examples/ConvolveBenchmarks/overhead.r: Idem
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* inst/include/Rcpp/Fast.h (Rcpp): Undo two const declarations
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2016-02-23 Dirk Eddelbuettel <[email protected]>
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* inst/examples/OpenMP/OpenMPandInline.r: Switched to '/usr/bin/env r'
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* inst/examples/RcppInline/RcppSimpleExample.r: Idem
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* inst/examples/RcppInline/RObject.r: Idem
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* inst/examples/RcppInline/UncaughtExceptions.r: Idem
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2016-02-21 Dirk Eddelbuettel <[email protected]>
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* inst/examples/functionCallback/newApiExample.r (vecfunc): Switched to
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using '/usr/bin/env r', switch to using 'cxxfunction'
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* inst/examples/Misc/fibonacci.r: Switched to using '/usr/bin/env r',
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added explicit load of Rcpp package
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* inst/examples/Misc/newFib.r: Switched to using '/usr/bin/env r'
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* inst/examples/Misc/ifelseLooped.r: Idem
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* inst/examples/Misc/piBySimulation.r: Idem
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* inst/examples/SugarPerformance/sugarBenchmarks.r: Idem
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2016-02-16 Dirk Eddelbuettel <[email protected]>
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* vignettes/Rcpp-FAQ.Rnw: Added answer on fixed-size limit of arguments

‎inst/examples/ConvolveBenchmarks/exampleRCode.r

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#!/usr/bin/r
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#!/usr/bin/env r
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suppressMessages(require(Rcpp))
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set.seed(42)

‎inst/examples/ConvolveBenchmarks/overhead.r

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#!/usr/bin/r
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#!/usr/bin/env r
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set.seed(42)
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a <- rnorm(100)
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## load benchmarkin helper function
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suppressMessages(library(rbenchmark))
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benchmark(
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overhead_cpp(a,b),
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overhead_c(a,b),
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columns=c("test", "replications", "elapsed", "relative", "user.self", "sys.self"),
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order="relative",
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replications=10000)
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res <- benchmark(overhead_cpp(a,b), overhead_c(a,b),
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columns=c("test", "replications", "elapsed", "relative", "user.self", "sys.self"),
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order="relative",
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replications=10000)
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print(res)

‎inst/examples/FastLM/benchmark.r

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#!/usr/bin/r -t
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#!/usr/bin/env r
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#
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# Comparison benchmark
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#
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# You should have received a copy of the GNU General Public License
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# along with Rcpp. If not, see <http://www.gnu.org/licenses/>.
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suppressMessages(library(RcppGSL))
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suppressMessages(library(RcppArmadillo))
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source("lmArmadillo.R")
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source("lmGSL.R")
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‎inst/examples/FastLM/benchmarkLongley.r

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#!/usr/bin/r -t
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#!/usr/bin/env r
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#
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# Comparison benchmark -- using old and small Longley data set
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#

‎inst/examples/FastLM/fastLMviaArmadillo.r

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#!/usr/bin/r -t
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#!/usr/bin/env r
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#
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# A faster lm() replacement based on Armadillo
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#

‎inst/examples/FastLM/fastLMviaGSL.r

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#!/usr/bin/r -t
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#!/usr/bin/env r
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#
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# A faster lm() replacement based on GNU GSL
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#

‎inst/examples/FastLM/lmArmadillo.R

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'
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## turn into a function that R can call
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fun <- cfunction(signature(Ysexp="numeric", Xsexp="numeric"),
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src,
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includes="#include <armadillo>",
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Rcpp=TRUE,
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cppargs="-I/usr/include",
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libargs="-larmadillo -llapack")
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fun <- cxxfunction(signature(Ysexp="numeric", Xsexp="numeric"),
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src,
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includes="#include <armadillo>",
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plugin="RcppArmadillo")
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}
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‎inst/examples/FastLM/lmGSL.R

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## turn into a function that R can call
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## compileargs redundant on Debian/Ubuntu as gsl headers are found anyway
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fun <- cfunction(signature(Ysexp="numeric", Xsexp="numeric"),
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src,
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includes="#include <gsl/gsl_multifit.h>",
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Rcpp=TRUE,
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cppargs="-I/usr/include",
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libargs="-lgsl -lgslcblas")
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fun <- cxxfunction(signature(Ysexp="numeric", Xsexp="numeric"),
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src,
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includes="#include <gsl/gsl_multifit.h>",
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plugin="RcppGSL")
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}

‎inst/examples/Misc/fibonacci.r

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#!/usr/bin/r
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#!/usr/bin/env r
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## this short example was provided in response to this StackOverflow questions:
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## http://stackoverflow.com/questions/6807068/why-is-my-recursive-function-so-slow-in-r
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## and illustrates that recursive function calls are a) really expensive in R and b) not
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## all expensive in C++ (my machine sees a 700-fold speed increase) and c) the byte
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## compiler in R does not help here.
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suppressMessages(library(Rcpp))
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## byte compiler
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require(compiler)
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