Merge pull request #468 from RcppCore/feature/14.6.0

RcppArmadillo 14.6.0

Author: eddelbuettel

ChangeLog

@@ -1,3 +1,38 @@
+2025-07-02  Dirk Eddelbuettel  <[email protected]>
+
+	* DESCRIPTION (Version, Date): RcppArmadillo 14.6.0-1
+        * inst/NEWS.Rd: Idem
+        * configure.ac: Idem
+        * configure: Idem
+
+	* inst/include/armadillo/: Armadillo 14.6.0
+	* inst/include/armadillo_bits/: Idem
+
+2025-07-01  Dirk Eddelbuettel  <[email protected]>
+
+	* DESCRIPTION (Version, Date): RcppArmadillo 14.5.92-1
+        * inst/NEWS.Rd: Idem
+        * configure.ac: Idem
+        * configure: Idem
+
+	* inst/include/armadillo/: Armadillo 14.5.92 as RC2 for 14.6.0
+	* inst/include/armadillo_bits/: Idem
+
+2025-06-30  Dirk Eddelbuettel  <[email protected]>
+
+	* DESCRIPTION (Version, Date): RcppArmadillo 14.5.91-1
+        * inst/NEWS.Rd: Idem
+        * configure.ac: Idem
+        * configure: Idem
+
+	* inst/include/armadillo/: Armadillo 14.5.91 as RC1 for 14.6.0
+	* inst/include/armadillo_bits/: Idem
+
+2025-06-21  Dirk Eddelbuettel  <[email protected]>
+
+	* man/fastLm.Rd: Update discussion of rank-deficient systems to note
+	that newer Armadillo versions warn and fall back to approx solution
+
 2025-05-21  Dirk Eddelbuettel  <[email protected]>
 
 	* DESCRIPTION (Version, Date): RcppArmadillo 14.4.3-1

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: RcppArmadillo
 Type: Package
 Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
-Version: 14.4.3-1
-Date: 2025-05-21
+Version: 14.6.0-1
+Date: 2025-07-02
 Authors@R: c(person("Dirk", "Eddelbuettel", role = c("aut", "cre"), email = "[email protected]",
                     comment = c(ORCID = "0000-0001-6419-907X")),
              person("Romain", "Francois", role = "aut",

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.72 for RcppArmadillo 14.4.3-1.
+# Generated by GNU Autoconf 2.72 for RcppArmadillo 14.6.0-1.
 #
 # Report bugs to <[email protected]>.
 #
@@ -603,8 +603,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='RcppArmadillo'
 PACKAGE_TARNAME='rcpparmadillo'
-PACKAGE_VERSION='14.4.3-1'
-PACKAGE_STRING='RcppArmadillo 14.4.3-1'
+PACKAGE_VERSION='14.6.0-1'
+PACKAGE_STRING='RcppArmadillo 14.6.0-1'
 PACKAGE_BUGREPORT='[email protected]'
 PACKAGE_URL=''
 
@@ -1222,7 +1222,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-'configure' configures RcppArmadillo 14.4.3-1 to adapt to many kinds of systems.
+'configure' configures RcppArmadillo 14.6.0-1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1284,7 +1284,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of RcppArmadillo 14.4.3-1:";;
+     short | recursive ) echo "Configuration of RcppArmadillo 14.6.0-1:";;
    esac
   cat <<\_ACEOF
 
@@ -1365,7 +1365,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-RcppArmadillo configure 14.4.3-1
+RcppArmadillo configure 14.6.0-1
 generated by GNU Autoconf 2.72
 
 Copyright (C) 2023 Free Software Foundation, Inc.
@@ -1481,7 +1481,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by RcppArmadillo $as_me 14.4.3-1, which was
+It was created by RcppArmadillo $as_me 14.6.0-1, which was
 generated by GNU Autoconf 2.72.  Invocation command line was
 
   $ $0$ac_configure_args_raw
@@ -3980,7 +3980,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by RcppArmadillo $as_me 14.4.3-1, which was
+This file was extended by RcppArmadillo $as_me 14.6.0-1, which was
 generated by GNU Autoconf 2.72.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -4035,7 +4035,7 @@ ac_cs_config_escaped=`printf "%s\n" "$ac_cs_config" | sed "s/^ //; s/'/'\\\\\\\\
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config='$ac_cs_config_escaped'
 ac_cs_version="\\
-RcppArmadillo config.status 14.4.3-1
+RcppArmadillo config.status 14.6.0-1
 configured by $0, generated by GNU Autoconf 2.72,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -11,7 +11,7 @@
 AC_PREREQ([2.69])
 
 ## Process this file with autoconf to produce a configure script.
-AC_INIT([RcppArmadillo],[14.4.3-1],[[email protected]])
+AC_INIT([RcppArmadillo],[14.6.0-1],[[email protected]])
 
 ## Set R_HOME, respecting an environment variable if one is set
 : ${R_HOME=$(R RHOME)}

inst/NEWS.Rd

@@ -3,6 +3,22 @@
 \newcommand{\ghpr}{\href{https://github.com/RcppCore/RcppArmadillo/pull/#1}{##1}}
 \newcommand{\ghit}{\href{https://github.com/RcppCore/RcppArmadillo/issues/#1}{##1}}
 
+\section{Changes in RcppArmadillo version 14.6.0-1 (2025-07-02)}{
+  \itemize{
+    \item Upgraded to Armadillo release 14.6.0 (Caffe Mocha)
+    \itemize{
+      \item Added \code{balance()} to transform matrices so that column and
+      row norms are roughly the same
+      \item Added \code{omit_nan()} and \code{omit_nonfinite()} to extract
+      elements while omitting NaN and non-finite values
+      \item Added \code{find_nonnan()} for finding indices of non-NaN elements
+      \item Added standalone \code{replace()} function
+    }
+    \item The \code{fastLm()} help page now mentions that options to
+    \code{solve()} can control its behavior.
+  }
+}
+
 \section{Changes in RcppArmadillo version 14.4.3-1 (2025-05-21)}{
   \itemize{
     \item Upgraded to Armadillo release 14.4.3 (Filtered Espresso)
@@ -20,9 +36,7 @@
       \item Fix for \code{expmat()}
       \item Workaround for bugs in clang 20 compiler
     }
-    \itemize{
-      \item Micro-cleanup in one test file
-    }
+    \item Micro-cleanup in one test file
   }
 }
 

inst/include/armadillo

@@ -304,6 +304,7 @@ namespace arma
   #include "armadillo_bits/op_clamp_bones.hpp"
   #include "armadillo_bits/op_expmat_bones.hpp"
   #include "armadillo_bits/op_nonzeros_bones.hpp"
+  #include "armadillo_bits/op_omit_bones.hpp"
   #include "armadillo_bits/op_diff_bones.hpp"
   #include "armadillo_bits/op_norm_bones.hpp"
   #include "armadillo_bits/op_vecnorm_bones.hpp"
@@ -377,6 +378,7 @@ namespace arma
   #include "armadillo_bits/spop_norm_bones.hpp"
   #include "armadillo_bits/spop_shift_bones.hpp"
   #include "armadillo_bits/spop_relational_bones.hpp"
+  #include "armadillo_bits/spop_omit_bones.hpp"
 
   #include "armadillo_bits/spglue_plus_bones.hpp"
   #include "armadillo_bits/spglue_minus_bones.hpp"
@@ -564,6 +566,7 @@ namespace arma
   #include "armadillo_bits/fn_clamp.hpp"
   #include "armadillo_bits/fn_expmat.hpp"
   #include "armadillo_bits/fn_nonzeros.hpp"
+  #include "armadillo_bits/fn_omit.hpp"
   #include "armadillo_bits/fn_interp1.hpp"
   #include "armadillo_bits/fn_interp2.hpp"
   #include "armadillo_bits/fn_qz.hpp"
@@ -590,6 +593,7 @@ namespace arma
   #include "armadillo_bits/fn_powmat.hpp"
   #include "armadillo_bits/fn_powext.hpp"
   #include "armadillo_bits/fn_diags_spdiags.hpp"
+  #include "armadillo_bits/fn_balance.hpp"
 
   #include "armadillo_bits/fn_speye.hpp"
   #include "armadillo_bits/fn_spones.hpp"
@@ -758,6 +762,7 @@ namespace arma
   #include "armadillo_bits/op_clamp_meat.hpp"
   #include "armadillo_bits/op_expmat_meat.hpp"
   #include "armadillo_bits/op_nonzeros_meat.hpp"
+  #include "armadillo_bits/op_omit_meat.hpp"
   #include "armadillo_bits/op_diff_meat.hpp"
   #include "armadillo_bits/op_norm_meat.hpp"
   #include "armadillo_bits/op_vecnorm_meat.hpp"
@@ -831,6 +836,7 @@ namespace arma
   #include "armadillo_bits/spop_norm_meat.hpp"
   #include "armadillo_bits/spop_shift_meat.hpp"
   #include "armadillo_bits/spop_relational_meat.hpp"
+  #include "armadillo_bits/spop_omit_meat.hpp"
 
   #include "armadillo_bits/spglue_plus_meat.hpp"
   #include "armadillo_bits/spglue_minus_meat.hpp"

inst/include/armadillo_bits/BaseCube_meat.hpp

@@ -328,7 +328,7 @@ BaseCube<elem_type,derived>::is_finite() const
     for(uword c=0; c<n_c; ++c)
     for(uword r=0; r<n_r; ++r)
       {
-      if( arma_isfinite(P.at(r,c,s)) == false )  { return false; }
+      if( arma_isnonfinite(P.at(r,c,s)) )  { return false; }
       }
     }
 
@@ -436,7 +436,7 @@ BaseCube<elem_type,derived>::has_nonfinite() const
     for(uword c=0; c<n_c; ++c)
     for(uword r=0; r<n_r; ++r)
       {
-      if(arma_isfinite(P.at(r,c,s)) == false)  { return true; }
+      if(arma_isnonfinite(P.at(r,c,s)))  { return true; }
       }
     }
 

inst/include/armadillo_bits/Base_meat.hpp

@@ -685,7 +685,7 @@ Base<elem_type,derived>::is_finite() const
 
       for(uword i=0; i<n_elem; ++i)
         {
-        if(arma_isfinite(Pea[i]) == false)  { return false; }
+        if(arma_isnonfinite(Pea[i]))  { return false; }
         }
       }
     else
@@ -696,7 +696,7 @@ Base<elem_type,derived>::is_finite() const
       for(uword col=0; col<n_cols; ++col)
       for(uword row=0; row<n_rows; ++row)
         {
-        if(arma_isfinite(P.at(row,col)) == false)  { return false; }
+        if(arma_isnonfinite(P.at(row,col)))  { return false; }
         }
       }
     }
@@ -829,7 +829,7 @@ Base<elem_type,derived>::has_nonfinite() const
 
       for(uword i=0; i<n_elem; ++i)
         {
-        if(arma_isfinite(Pea[i]) == false)  { return true; }
+        if(arma_isnonfinite(Pea[i]))  { return true; }
         }
       }
     else
@@ -840,7 +840,7 @@ Base<elem_type,derived>::has_nonfinite() const
       for(uword col=0; col<n_cols; ++col)
       for(uword row=0; row<n_rows; ++row)
         {
-        if(arma_isfinite(P.at(row,col)) == false)  { return true; }
+        if(arma_isnonfinite(P.at(row,col)))  { return true; }
         }
       }
     }

inst/include/armadillo_bits/Cube_meat.hpp

@@ -784,6 +784,10 @@ Cube<eT>::operator=(const Cube<eT>& x)
 
     arrayops::copy( memptr(), x.mem, n_elem );
     }
+  else
+    {
+    arma_debug_print("Cube::operator=(): copy omitted");
+    }
 
   return *this;
   }

inst/include/armadillo_bits/MapMat_meat.hpp

@@ -106,7 +106,12 @@ MapMat<eT>::operator=(const MapMat<eT>& x)
   {
   arma_debug_sigprint();
 
-  if(this == &x)  { return; }
+  if(this == &x)
+    {
+    arma_debug_print("MapMat::operator=(): copy omitted");
+    
+    return;
+    }
 
   access::rw(n_rows) = x.n_rows;
   access::rw(n_cols) = x.n_cols;