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Bump actions/checkout from 5 to 6 #164

Bump actions/checkout from 5 to 6

Bump actions/checkout from 5 to 6 #164

Triggered via pull request November 24, 2025 01:08
Status Failure
Total duration 10m 57s
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6 errors
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Process completed with exit code 1.
Documentation: ../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:783-801 ```@example Main function subplot_power(f::Figure, dat, coefname) coefpow = @subset(dat, :coefname == coefname) ax = Axis(f; xlabel="n subjects", ylabel="n items", #aspect=AxisAspect(1), title="$(coefname)") heatmap!(ax, coefpow.subj_n, coefpow.item_n, coefpow.power; colorrange=[0,1]) return ax end fig = Figure(; resolution=(1300,300)) for (idx, cn) in enumerate(sort(unique(d.coefname))) fig[1, idx] = subplot_power(fig, d, cn) end Colorbar(fig[1, end+1]; label="power", vertical=true, colorrange=[0,1], colormap=:viridis) fig ``` exception = UndefVarError: `Figure` not defined in `Main.__atexample__named__Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ simulation_tutorial.md:784 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] #61 @ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined] [4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878 [6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
Documentation: ../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:736-774 ```@example Main @showprogress for subj_n in sub_ns, item_n in item_ns # Make balanced fully crossed data: fake = simdat_crossed(subj_n, item_n; subj_btwn = subj_btwn, item_btwn = item_btwn, both_win = both_win); fake_df = DataFrame(fake) # Reduce the balanced fully crossed design to the original experimental design: fake_df = sort(fake_df, [:subj, :item, :load, :prec, :spkr]) local len = convert(Int64,(length(fake)/8)) local idx = rand(rng, collect(1:8) , len) local A = repeat([8], inner=len-1) push!(A, 0) A = cumsum(A) idx = idx + A fake_df = fake_df[idx, :] rename!(fake_df, :dv => :rt_trunc) # create the model: fake_m = LinearMixedModel(kb07_f, fake_df, contrasts=contrasts); local new_theta = createθ(fake_m; item=re_item, subj=re_subj) # Run nsims iterations: fake_sim = parametricbootstrap(rng, nsims, fake_m, β = new_beta, σ = new_sigma, θ = new_theta, progress=false); # Power calculation local ptbl = power_table(fake_sim) ptdf = DataFrame(ptbl) ptdf[!, :item_n] .= item_n ptdf[!, :subj_n] .= subj_n append!(d, ptdf) end nothing # hide ``` exception = LoadError: UndefVarError: `@showprogress` not defined in `Main.__atexample__named__Main` Suggestion: check for spelling errors or missing imports. Hint: a global variable of this name also exists in ProgressMeter. Stacktrace: [1] eval(m::Module, e::Any) @ Core ./boot.jl:489 [2] #61 @ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined] [3] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [4] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878 [5] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170 [6] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [7] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [8] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167 [9] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877 in expression starting at simulation_tutorial.md:737
Documentation: ../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:165-167 ```@example Main ridgeplot(kb07_sim; show_intercept=false) ``` exception = UndefVarError: `ridgeplot` not defined in `Main.__atexample__named__Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ simulation_tutorial.md:166 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] #61 @ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined] [4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878 [6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
Documentation: ../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:136-162 ```@example Main fig = Figure() σres = @subset(df, :type == "σ" && :group == "residual") ax = Axis(fig[1,1:2]; xlabel = "residual standard deviation", ylabel = "Density") density!(ax, σres.value) βInt = @subset(df, :type == "β" && :names == "(Intercept)") ax = Axis(fig[1,3]; xlabel = "fixed effect for intercept") density!(ax, βInt.value) βSpeaker = @subset(df, :type == "β" && :names == "spkr: old") ax = Axis(fig[2,1]; xlabel = "fixed effect for spkr: old", ylabel = "Density") density!(ax, βSpeaker.value) βPrecedents = @subset(df, :type == "β" && :names == "prec: break") ax = Axis(fig[2,2]; xlabel = "fixed effect for prec: break") density!(ax, βPrecedents.value) βLoad = @subset(df, :type == "β" && :names == "load: yes") ax = Axis(fig[2,3]; xlabel = "fixed effect for load: yes") density!(ax, βLoad.value) Label(fig[0,:]; text = "Parametric bootstrap replicates by parameter", fontsize=25) fig ``` exception = UndefVarError: `Figure` not defined in `Main.__atexample__named__Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ simulation_tutorial.md:137 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] #61 @ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined] [4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878 [6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
Documentation: ../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:24-35 ```@example Main using MixedModels # run mixed models using MixedModelsSim # simulation utilities using DataFrames, Tables # work with dataframes using StableRNGs # random number generator using Statistics # basic statistical functions using DataFrameMacros # dplyr-like operations using CairoMakie # plotting package CairoMakie.activate!(type="svg") # use vector graphics using MixedModelsMakie # some extra plotting function for MixedModels using ProgressMeter # show progress in loops ``` exception = The following 1 direct dependency failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/runner/.julia/compiled/v1.12/CairoMakie/jl_TTjBkD". ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:54 [2] func2string(func::typeof(MakieCore.linesegments)) @ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/recipes.jl:9 [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) @ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/recipes.jl:40 [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/recipes.jl:41 [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) @ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/attributes.jl:237 [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) @ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/attributes.jl:234 [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) @ CairoMakie ~/.julia/packages/CairoMakie/JchUZ/src/primitives.jl:6 [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/JchUZ/src/infrastructure.jl:135 [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) @ CairoMakie ~/.julia/packages/CairoMakie/JchUZ/src/infrastructure.jl:49 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) @ CairoMakie�[3