Bump actions/checkout from 5 to 6 #164
Triggered via pull request
November 24, 2025 01:08
Status
Failure
Total duration
10m 57s
Artifacts
–
Annotations
6 errors
|
Documentation
Process completed with exit code 1.
|
|
Documentation:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:783-801
```@example Main
function subplot_power(f::Figure, dat, coefname)
coefpow = @subset(dat, :coefname == coefname)
ax = Axis(f;
xlabel="n subjects",
ylabel="n items",
#aspect=AxisAspect(1),
title="$(coefname)")
heatmap!(ax, coefpow.subj_n, coefpow.item_n, coefpow.power; colorrange=[0,1])
return ax
end
fig = Figure(; resolution=(1300,300))
for (idx, cn) in enumerate(sort(unique(d.coefname)))
fig[1, idx] = subplot_power(fig, d, cn)
end
Colorbar(fig[1, end+1]; label="power", vertical=true, colorrange=[0,1], colormap=:viridis)
fig
```
exception =
UndefVarError: `Figure` not defined in `Main.__atexample__named__Main`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ simulation_tutorial.md:784
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:540
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:651
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
|
|
Documentation:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:736-774
```@example Main
@showprogress for subj_n in sub_ns, item_n in item_ns
# Make balanced fully crossed data:
fake = simdat_crossed(subj_n, item_n;
subj_btwn = subj_btwn,
item_btwn = item_btwn,
both_win = both_win);
fake_df = DataFrame(fake)
# Reduce the balanced fully crossed design to the original experimental design:
fake_df = sort(fake_df, [:subj, :item, :load, :prec, :spkr])
local len = convert(Int64,(length(fake)/8))
local idx = rand(rng, collect(1:8) , len)
local A = repeat([8], inner=len-1)
push!(A, 0)
A = cumsum(A)
idx = idx + A
fake_df = fake_df[idx, :]
rename!(fake_df, :dv => :rt_trunc)
# create the model:
fake_m = LinearMixedModel(kb07_f, fake_df, contrasts=contrasts);
local new_theta = createθ(fake_m; item=re_item, subj=re_subj)
# Run nsims iterations:
fake_sim = parametricbootstrap(rng, nsims, fake_m,
β = new_beta,
σ = new_sigma,
θ = new_theta,
progress=false);
# Power calculation
local ptbl = power_table(fake_sim)
ptdf = DataFrame(ptbl)
ptdf[!, :item_n] .= item_n
ptdf[!, :subj_n] .= subj_n
append!(d, ptdf)
end
nothing # hide
```
exception =
LoadError: UndefVarError: `@showprogress` not defined in `Main.__atexample__named__Main`
Suggestion: check for spelling errors or missing imports.
Hint: a global variable of this name also exists in ProgressMeter.
Stacktrace:
[1] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[2] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[3] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[4] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[5] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[6] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:540
[7] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:651
[8] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[9] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
in expression starting at simulation_tutorial.md:737
|
|
Documentation:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:165-167
```@example Main
ridgeplot(kb07_sim; show_intercept=false)
```
exception =
UndefVarError: `ridgeplot` not defined in `Main.__atexample__named__Main`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ simulation_tutorial.md:166
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:540
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:651
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
|
|
Documentation:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:136-162
```@example Main
fig = Figure()
σres = @subset(df, :type == "σ" && :group == "residual")
ax = Axis(fig[1,1:2]; xlabel = "residual standard deviation", ylabel = "Density")
density!(ax, σres.value)
βInt = @subset(df, :type == "β" && :names == "(Intercept)")
ax = Axis(fig[1,3]; xlabel = "fixed effect for intercept")
density!(ax, βInt.value)
βSpeaker = @subset(df, :type == "β" && :names == "spkr: old")
ax = Axis(fig[2,1]; xlabel = "fixed effect for spkr: old", ylabel = "Density")
density!(ax, βSpeaker.value)
βPrecedents = @subset(df, :type == "β" && :names == "prec: break")
ax = Axis(fig[2,2]; xlabel = "fixed effect for prec: break")
density!(ax, βPrecedents.value)
βLoad = @subset(df, :type == "β" && :names == "load: yes")
ax = Axis(fig[2,3]; xlabel = "fixed effect for load: yes")
density!(ax, βLoad.value)
Label(fig[0,:]; text = "Parametric bootstrap replicates by parameter", fontsize=25)
fig
```
exception =
UndefVarError: `Figure` not defined in `Main.__atexample__named__Main`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ simulation_tutorial.md:137
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:540
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:651
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
|
|
Documentation:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/simulation_tutorial.md:24-35
```@example Main
using MixedModels # run mixed models
using MixedModelsSim # simulation utilities
using DataFrames, Tables # work with dataframes
using StableRNGs # random number generator
using Statistics # basic statistical functions
using DataFrameMacros # dplyr-like operations
using CairoMakie # plotting package
CairoMakie.activate!(type="svg") # use vector graphics
using MixedModelsMakie # some extra plotting function for MixedModels
using ProgressMeter # show progress in loops
```
exception =
The following 1 direct dependency failed to precompile:
CairoMakie
Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/runner/.julia/compiled/v1.12/CairoMakie/jl_TTjBkD".
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
[1] getproperty(x::Core.TypeName, f::Symbol)
@ Base ./Base_compiler.jl:54
[2] func2string(func::typeof(MakieCore.linesegments))
@ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/recipes.jl:9
[3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
@ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/recipes.jl:40
[4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
@ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/recipes.jl:41
[5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
@ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/attributes.jl:237
[6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
@ MakieCore ~/.julia/packages/MakieCore/EU17Y/src/attributes.jl:234
[7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
@ CairoMakie ~/.julia/packages/CairoMakie/JchUZ/src/primitives.jl:6
[8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
@ CairoMakie ~/.julia/packages/CairoMakie/JchUZ/src/infrastructure.jl:135
[9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
@ CairoMakie ~/.julia/packages/CairoMakie/JchUZ/src/infrastructure.jl:49
[10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
@ CairoMakie�[3
|