Update the README to be more clean and include more information

Author: connie

README.md

@@ -1,39 +1,58 @@
-# <img align="top" src="https://raw.githubusercontent.com/ReactionMechanismGenerator/RMG-Py/master/documentation/source/_static/rmg-logo-small.png"> RMG Py - Reaction Mechanism Generator (Python Version) 
+# <img align="top" src="https://raw.githubusercontent.com/ReactionMechanismGenerator/RMG-Py/master/documentation/source/_static/rmg-logo-small.png"> Reaction Mechanism Generator (RMG)
 
-This repository contains the Python version of Reaction Mechanism Generator 
-(RMG), a tool for automatically generating chemical reaction
+## Description
+This repository contains the Python version of **Reaction Mechanism Generator (RMG)**,
+a tool for automatically generating chemical reaction
 mechanisms for modeling reaction systems including pyrolysis, combustion,
 atmospheric science, and more.
 
-It also includes CanTherm, the package for calculating thermodynamics, high-pressure-limit
+It also includes **CanTherm**, the package for calculating thermodynamics, high-pressure-limit
 rate coefficients, and pressure dependent rate coefficients from quantum chemical calculations.
 CanTherm is compatible with a variety of ab initio quantum chemistry software programs, including but not limited to
 Gaussian, MOPAC, QChem, and MOLPRO.
 
-The most official repository can be found on github and is located at https://github.com/ReactionMechanismGenerator/RMG-Py.
-Instructions on how to use RMG can be found in the [RMG Documentation](http://ReactionMechanismGenerator.github.io/RMG-Py/) including
-details on [how to install RMG-Py](http://ReactionMechanismGenerator.github.io/RMG-Py/users/rmg/installation/index.html)
-and its numerous dependencies.  The [CanTherm Documentation](http://ReactionMechanismGenerator.github.io/RMG-Py/users/cantherm/) is also available online.
- PDF versions of all the documentation can also be found in the documentation folder of the source code.  
+## Source Code Repository
+- [RMG Github Repository](https://github.com/ReactionMechanismGenerator/RMG-Py): contains the latest source code for RMG
+- [RMG-database Github Repository](https://github.com/ReactionMechanismGenerator/RMG-database): contains source code for the latest version of the database
 
+## Latest Stable Release
+**RMG v1.0.2**
 
+View the [Release Notes](http://reactionmechanismgenerator.github.io/RMG-Py/users/rmg/releaseNotes.html).
 
-RMG is developed primarily by researchers in 
-[Prof. William Green's research group](http://cheme.scripts.mit.edu/green-group/) at the 
+## How to Install
+View the [Download and Install](http://reactionmechanismgenerator.github.io/RMG-Py/users/rmg/installation/index.html) page/
+
+## Documentation
+- [RMG Documentation](http://ReactionMechanismGenerator.github.io/RMG-Py/) ([PDF version](https://github.com/ReactionMechanismGenerator/RMG-Py/raw/master/documentation/RMG-Py_and_CanTherm_Documentation.pdf))
+- [CanTherm Documentation](http://ReactionMechanismGenerator.github.io/RMG-Py/users/cantherm/) ([PDF version](https://github.com/ReactionMechanismGenerator/RMG-Py/raw/master/documentation/RMG-Py_and_CanTherm_Documentation.pdf))
+- [RMG API Reference](http://reactionmechanismgenerator.github.io/RMG-Py/reference/index.html) ([PDF version](https://github.com/ReactionMechanismGenerator/RMG-Py/raw/master/documentation/RMG-Py_API_Reference.pdf))
+
+Alternatively, PDF versions of all the documentation can also be found in the `documentation` folder of the source code.  
+
+## Credits
+
+- [Professor William H. Green's research group](http://cheme.scripts.mit.edu/green-group/) at the 
 [Massachusetts Institute of Technology](http://web.mit.edu/) 
-and [Prof. Richard West's research group](http://www.northeastern.edu/comocheng/) at 
+- [Professor Richard H. West's research group](http://www.northeastern.edu/comocheng/) at 
 [Northeastern University](http://www.northeastern.edu/). 
 
+## How to Give Feedback
+
+Please post any issues you may have to the [issues page](https://github.com/ReactionMechanismGenerator/RMG-Py/issues/)
+or email [[email protected]](mailto:[email protected]) if you have questions.  
+
+## Useful Links
+
+- [Interactive Website](http://rmg.mit.edu): Visit this site to visualize RMG-generated models, view the databases, and 
+perform thermodynamics and kinetics searches
+- [Wiki](https://github.com/ReactionMechanismGenerator/RMG-Py/wiki): a wiki for developer notes
+- [Issues Page](https://github.com/ReactionMechanismGenerator/RMG-Py/issues/): view current issues and feature requests
+
+
+## Continuous Integration
 
 We have a continuous integration build test suite 
 which you can access at https://travis-ci.org/ReactionMechanismGenerator/RMG-Py
 The current build status is
 [![Build Status](https://travis-ci.org/ReactionMechanismGenerator/RMG-Py.svg?branch=master)](https://travis-ci.org/ReactionMechanismGenerator/RMG-Py)
-
-Details of the (earlier established) Java version of RMG can be found
-on [Sourceforge](http://rmg.sourceforge.net/) (although it too is 
-developed [here on github](https://github.com/ReactionMechanismGenerator/RMG-Java/)). 
-
-Please post any issues you may have to the [issues page](https://github.com/ReactionMechanismGenerator/RMG-Py/issues/)
-or email [[email protected]](mailto:[email protected]) if you have questions.  
-