chore: remove skott dependency and add security overrides

Remove the `skott` dependency and its `lint:deps` script from the root
package. Add `markdown-it` and `undici` to pnpm overrides for security
updates. Enable nested packages glob pattern in workspace config.

Author: Rel1cx

package.json

@@ -22,7 +22,6 @@
     "format:check": "dprint check",
     "format:write": "dprint fmt",
     "lint": "pnpm run lint:deps && pnpm run lint:publish && pnpm run lint:ts && pnpm run lint:examples",
-    "lint:deps": "skott -m file-tree -e .ts -s",
     "lint:examples": "pnpm m -F \"./examples/*\" run lint",
     "lint:publish": "pnpm m run lint:publish",
     "lint:ts": "pnpm m run lint:ts",
@@ -43,7 +42,6 @@
     "dprint": "^0.51.1",
     "effect": "^3.19.17",
     "publint": "^0.3.17",
-    "skott": "^0.35.7",
     "sort-package-json": "^3.6.1",
     "tinyglobby": "^0.2.15",
     "ts-pattern": "^5.9.0",