Use dcm2niix v1.0.20180622

Author: mvdoc

Dockerfile

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.1-dev
-# Timestamp: 2018-07-22 14:06:09 UTC
+# Timestamp: 2018-07-22 14:07:05 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -78,7 +78,7 @@ RUN mkdir /afs /inbox
 
 RUN pip install heudiconv
 
-ENV PATH="/opt/dcm2niix-v1.0.20180328/bin:$PATH"
+ENV PATH="/opt/dcm2niix-v1.0.20180622/bin:$PATH"
 RUN apt-get update -qq \
     && apt-get install -y -q --no-install-recommends \
            cmake \
@@ -93,10 +93,10 @@ RUN apt-get update -qq \
     && git clone https://github.com/rordenlab/dcm2niix /tmp/dcm2niix \
     && cd /tmp/dcm2niix \
     && git fetch --tags \
-    && git checkout v1.0.20180328 \
+    && git checkout v1.0.20180622 \
     && mkdir /tmp/dcm2niix/build \
     && cd /tmp/dcm2niix/build \
-    && cmake  -DCMAKE_INSTALL_PREFIX:PATH=/opt/dcm2niix-v1.0.20180328 .. \
+    && cmake  -DCMAKE_INSTALL_PREFIX:PATH=/opt/dcm2niix-v1.0.20180622 .. \
     && make \
     && make install \
     && rm -rf /tmp/dcm2niix
@@ -165,7 +165,7 @@ RUN echo '{ \
     \n    [ \
     \n      "dcm2niix", \
     \n      { \
-    \n        "version": "v1.0.20180328", \
+    \n        "version": "v1.0.20180622", \
     \n        "method": "source" \
     \n      } \
     \n    ], \

Singularity

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.1-dev
-# Timestamp: 2018-07-22 14:06:11 UTC
+# Timestamp: 2018-07-22 14:07:07 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -87,10 +87,10 @@ rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 git clone https://github.com/rordenlab/dcm2niix /tmp/dcm2niix
 cd /tmp/dcm2niix
 git fetch --tags
-git checkout v1.0.20180328
+git checkout v1.0.20180622
 mkdir /tmp/dcm2niix/build
 cd /tmp/dcm2niix/build
-cmake  -DCMAKE_INSTALL_PREFIX:PATH=/opt/dcm2niix-v1.0.20180328 ..
+cmake  -DCMAKE_INSTALL_PREFIX:PATH=/opt/dcm2niix-v1.0.20180622 ..
 make 
 make install
 rm -rf /tmp/dcm2niix
@@ -164,7 +164,7 @@ echo '{
 \n    [
 \n      "dcm2niix",
 \n      {
-\n        "version": "v1.0.20180328",
+\n        "version": "v1.0.20180622",
 \n        "method": "source"
 \n      }
 \n    ],
@@ -187,7 +187,7 @@ echo '{
 export LANG="en_US.UTF-8"
 export LC_ALL="en_US.UTF-8"
 export ND_ENTRYPOINT="/neurodocker/startup.sh"
-export PATH="/opt/dcm2niix-v1.0.20180328/bin:$PATH"
+export PATH="/opt/dcm2niix-v1.0.20180622/bin:$PATH"
 
 %runscript
 /neurodocker/heudiconv.sh

generate_container.sh

@@ -13,7 +13,7 @@ generate() {
     --run "npm install -g [email protected]" \
     --run "mkdir /afs /inbox" \
     --run "pip install heudiconv" \
-    --dcm2niix version="v1.0.20180328" method="source" \
+    --dcm2niix version="v1.0.20180622" method="source" \
     --run "echo '#!/bin/bash' >> /neurodocker/heudiconv.sh && echo 'heudiconv \"\$@\"' >> /neurodocker/heudiconv.sh && chmod +x /neurodocker/heudiconv.sh" \
     --user=reproin \
     --entrypoint "/neurodocker/heudiconv.sh"