Merge pull request #51 from djarecka/context

moving CONTEXTFILE_URL to a separate file so it is easier to update

Author: djarecka

reproschema/context_url.py

@@ -0,0 +1 @@
+CONTEXTFILE_URL = "https://raw.githubusercontent.com/ReproNim/reproschema/ref/linkml/contexts/reproschema"

reproschema/jsonldutils.py

@@ -5,7 +5,8 @@
 from copy import deepcopy
 import requests
 from urllib.parse import urlparse
-from .utils import start_server, stop_server, lgr, fixing_old_schema, CONTEXTFILE_URL
+from .utils import start_server, stop_server, lgr, fixing_old_schema
+from .context_url import CONTEXTFILE_URL
 from .models import (
     Item,
     Activity,

reproschema/redcap2reproschema.py

@@ -6,7 +6,7 @@
 from pathlib import Path
 from bs4 import BeautifulSoup
 from .models import Activity, Item, Protocol, write_obj_jsonld
-from .utils import CONTEXTFILE_URL
+from .context_url import CONTEXTFILE_URL
 
 matrix_group_count = {}
 

reproschema/reproschema2redcap.py

@@ -14,7 +14,8 @@
     Response,
     write_obj_jsonld,
 )
-from .utils import fixing_old_schema, start_server, stop_server, CONTEXTFILE_URL
+from .utils import fixing_old_schema, start_server, stop_server
+from .context_url import CONTEXTFILE_URL
 from .jsonldutils import load_file, _is_file, _is_url
 
 

reproschema/tests/test_rs2redcap_redcap2rs.py

@@ -8,7 +8,8 @@
 
 from ..models import Protocol, Activity, Item, ResponseOption
 from ..jsonldutils import load_file, _is_url
-from ..utils import fixing_old_schema, start_server, stop_server, CONTEXTFILE_URL
+from ..utils import fixing_old_schema, start_server, stop_server
+from ..context_url import CONTEXTFILE_URL
 from ..redcap2reproschema import normalize_condition
 
 
@@ -356,7 +357,6 @@ def test_rs2redcap_redcap2rs(tmpdir):
     )
     protocol_schema_final = "output_nimh/nimh_minimal/nimh_minimal/nimh_minimal_schema"
 
-    breakpoint()
     http_kwargs = {}
     stop, port = start_server()
     http_kwargs["port"] = port

reproschema/utils.py

@@ -10,9 +10,6 @@
 
 lgr = get_logger()
 
-# todo: move it somewhere
-CONTEXTFILE_URL = "https://raw.githubusercontent.com/ReproNim/reproschema/ref/linkml/contexts/reproschema"
-
 
 class LoggingRequestHandler(SimpleHTTPRequestHandler):
     def log_message(self, format, *args):