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better markdown on RO2018 proceedings
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‎ro2018/ro2018-proceedings/index.md‎

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@@ -25,25 +25,25 @@ RO2018 encouraged _open peer review_, and recommend that reviewers are named an
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_Three short research papers were accepted for [talks](/ro2018/ro2018-schedule/) at RO2018 and have been published in the [IEEE eScience 2018](http://archive.is/FxKe8) [archived 2019-08-01] official [conference proceedings](https://ieeexplore.ieee.org/servlet/opac?punumber=1001511) <https://doi.org/10.1109/e-Science43179.2018>._
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[Stian Soiland-Reyes](https://orcid.org/0000-0001-9842-9718) and [Marcos Cáceres](https://marcosc.com/) (2018):
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** The Archive and Package (arcp) URI scheme**
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[Stian Soiland-Reyes](https://orcid.org/0000-0001-9842-9718), [Marcos Cáceres](https://marcosc.com/) (2018):
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**The Archive and Package (arcp) URI scheme**.
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_2018 IEEE 14th International Conference on e-Science (e-Science)_
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<https://doi.org/10.1109/eScience.2018.00018>
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Preprint: <https://doi.org/10.5281/zenodo.1320264> [[html](http://s11.no/2018/arcp.html)] [[pdf](https://zenodo.org/record/1320264/files/arcp.pdf?download=1)] [[research object](http://s11.no/2018/arcp.html#ro)]
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Preprint: <https://doi.org/10.5281/zenodo.1320264> [[html](http://s11.no/2018/arcp.html)] [[pdf](https://zenodo.org/record/1320264/files/arcp.pdf?download=1)] [[research object](http://s11.no/2018/arcp.html#ro)]
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Camera-ready: [arXiv:1809.06935](https://arxiv.org/abs/1809.06935) [[pdf](https://www.research.manchester.ac.uk/portal/files/83366888/arcp_camera_ready.pdf)]
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[Bryce Mecum](http://orcid.org/0000-0002-0381-3766), [Matthew Jones](https://orcid.org/0000-0003-0077-4738), [Dave Vieglais](https://orcid.org/0000-0002-6513-4996) and [Craig Willis](https://orcid.org/0000-0002-6148-7196) (2018):
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**Preserving Reproducibility: Provenance and Executable Containers in DataONE Data Packages**
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2018 IEEE 14th International Conference on e-Science (e-Science)
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<https://doi.org/10.1109/eScience.2018.00019>
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Preprint: <https://doi.org/10.5281/zenodo.1313218> [[pdf](https://zenodo.org/record/1313218/files/mecum-dataone-reproducible-packages-2018.pdf?download=1)]
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[Bryce Mecum](http://orcid.org/0000-0002-0381-3766), [Matthew Jones](https://orcid.org/0000-0003-0077-4738), [Dave Vieglais](https://orcid.org/0000-0002-6513-4996), [Craig Willis](https://orcid.org/0000-0002-6148-7196) (2018):
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**Preserving Reproducibility: Provenance and Executable Containers in DataONE Data Packages**.
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2018 IEEE 14th International Conference on e-Science (e-Science)
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<https://doi.org/10.1109/eScience.2018.00019>
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Preprint: <https://doi.org/10.5281/zenodo.1313218> [[pdf](https://zenodo.org/record/1313218/files/mecum-dataone-reproducible-packages-2018.pdf?download=1)]
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Camera-ready: <https://doi.org/10.5281/zenodo.1420531> [[pdf](https://zenodo.org/record/1420531/files/mecum-dataone-reproducible-packages-2018.pdf?download=1)]
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Raul Palma, Andrés García-Silva, Jose Manuel Gomez-Perez and Marcin Krystek (2018):
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**A Research Object-based Toolkit to Support the Earth Science Research Lifecycle**
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_2018 IEEE 14th International Conference on e-Science (e-Science)_
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<https://doi.org/10.1109/eScience.2018.00020>
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Preprint: <https://doi.org/10.24424/ro-id.J8MDSX693G> [[pdf](http://sandbox.rohub.org/rodl/ROs/ROToolkit_ro2018-snapshot/ROToolkit-ES.pdf)] [[research object](http://sandbox.rohub.org/rodl/ROs/ROToolkit_ro2018-snapshot/)]
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Raul Palma, Andrés García-Silva, Jose Manuel Gomez-Perez, Marcin Krystek (2018):
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**A Research Object-based Toolkit to Support the Earth Science Research Lifecycle**.
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_2018 IEEE 14th International Conference on e-Science (e-Science)_
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<https://doi.org/10.1109/eScience.2018.00020>
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Preprint: <https://doi.org/10.24424/ro-id.J8MDSX693G> [[pdf](http://sandbox.rohub.org/rodl/ROs/ROToolkit_ro2018-snapshot/ROToolkit-ES.pdf)] [[research object](http://sandbox.rohub.org/rodl/ROs/ROToolkit_ro2018-snapshot/)]
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Camera-ready: <https://doi.org/10.24424/ro-id.DBIMALEDRQ> [[pdf](http://sandbox.rohub.org/rodl/ROs/ROToolkit_ro2018-published/ROToolkit-ES-CR.pdf)] [[html .zip](http://sandbox.rohub.org/rodl/ROs/ROToolkit_ro2018-published/ROToolkit-ES-CR.zip)] [[research object](http://sandbox.rohub.org/rodl/ROs/ROToolkit_ro2018-published/)]
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@@ -55,88 +55,90 @@ Publications in the [IEEE eScience 2018 proceedings](https://ieeexplore.ieee.org
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_These abstracts have been accepted for [talks](/ro2018/ro2018-schedule/) at RO2018:_
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Anita Bandrowski, Tom Gillespie and Mary Ann Martone (2018):
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[Research Resource IDentifiers for Key Biological Resources](http://doi.org/10.5281/zenodo.1287973)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Anita Bandrowski, Tom Gillespie, Mary Ann Martone (2018):
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[Research Resource IDentifiers for Key Biological Resources](http://doi.org/10.5281/zenodo.1287973).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1412731](https://doi.org/10.5281/zenodo.1412731)
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Daniella Lowenberg and Elizabeth Hull (2018):
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[Community Needs and Priorities for the Future of Open Data Publishing: Dryad & California Digital Library](https://doi.org/10.5281/zenodo.1299320)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Daniella Lowenberg, Elizabeth Hull (2018):
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[Community Needs and Priorities for the Future of Open Data Publishing: Dryad & California Digital Library](https://doi.org/10.5281/zenodo.1299320).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1299320](https://doi.org/10.5281/zenodo.1299320)
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Rachael Lammey (2018):
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[Mapping relationships between research objects](https://doi.org/10.5281/zenodo.1410238)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Rachael Lammey (2018):
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[Mapping relationships between research objects](https://doi.org/10.5281/zenodo.1410238).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1410238](https://doi.org/10.5281/zenodo.1410238)
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Jo Barratt and Serah Rono (2018):
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[Frictionless Data and Data Packages](https://doi.org/10.5281/zenodo.1301152)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Jo Barratt, Serah Rono (2018):
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[Frictionless Data and Data Packages](https://doi.org/10.5281/zenodo.1301152).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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<https://doi.org/10.5281/zenodo.1301152>
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Folker Meyer, Robert Finn, Wolfgang Gerlach, Alex Mitchell, Travis Harrison, Andreas Wilke (2018):
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[On the way to research objects for environmental genomics (or metagenomics)](https://doi.org/10.5281/zenodo.1309962)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Folker Meyer, Robert Finn, Wolfgang Gerlach, Alex Mitchell, Travis Harrison, Andreas Wilke (2018):
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[On the way to research objects for environmental genomics (or metagenomics)](https://doi.org/10.5281/zenodo.1309962).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1309962](https://doi.org/10.5281/zenodo.1309962)
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Ravi Madduri, Kyle Chard, Michael D'Arcy, Segun Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman, Nathan Price, Carl Kesselman and Ian Foster:
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[Reproducible big data science: A case study in continuous FAIRness](https://doi.org/10.5281/zenodo.1310034)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Ravi Madduri, Kyle Chard, Michael D'Arcy, Segun Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman, Nathan Price, Carl Kesselman, Ian Foster (2018):
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[Reproducible big data science: A case study in continuous FAIRness](https://doi.org/10.5281/zenodo.1310034).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1310034](https://doi.org/10.5281/zenodo.1310034)
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Peter Wittenburg, Dimitris Koureas, Larry Lannom and Robert Quick:
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[Implementing a Flexible Infrastructure for a Digital Object Based Data Management](https://doi.org/10.5281/zenodo.1310621)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Peter Wittenburg, Dimitris Koureas, Larry Lannom, Robert Quick (2018):
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[Implementing a Flexible Infrastructure for a Digital Object Based Data Management](https://doi.org/10.5281/zenodo.1310621).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1310621](https://doi.org/10.5281/zenodo.1310621)
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Michael Aufreiter and Naomi Penfold:
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[The Reproducible Document Stack reinvents the journal publication for a world of computationally reproducible research](https://doi.org/10.5281/zenodo.1311612)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Michael Aufreiter, Naomi Penfold (2018):
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[The Reproducible Document Stack reinvents the journal publication for a world of computationally reproducible research](https://doi.org/10.5281/zenodo.1311612).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1311612](https://doi.org/10.5281/zenodo.1311612)
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Peter Sefton, Michael Lynch, Gerard Devine and Duncan Loxton:
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[DataCrate: a method of packaging, distributing, displaying and archiving Research Objects](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.html)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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<https://doi.org/10.5281/zenodo.1445817> ([html](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.html)) ([pdf](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.pdf)) ([DataCrate](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/)) ([zip](https://zenodo.org/record/1445817/files/datacrate-RO-2018.zip?download=1))
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Peter Sefton, Michael Lynch, Gerard Devine, Duncan Loxton (2018):
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[DataCrate: a method of packaging, distributing, displaying and archiving Research Objects](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.html).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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<https://doi.org/10.5281/zenodo.1445817>
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([html](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.html)) ([pdf](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/data/paper.pdf)) ([DataCrate](https://data.research.uts.edu.au/examples/v1.0/datacrate-RO-2018/)) ([zip](https://zenodo.org/record/1445817/files/datacrate-RO-2018.zip?download=1))
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Oya Beyan, Andrea Wuchner, Dirk Eisengräber-Pabst, Christoph Quix, Christian Zaschke and Oliver Schumacher:
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[ Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture](https://doi.org/10.5281/zenodo.1441011)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Oya Beyan, Andrea Wuchner, Dirk Eisengräber-Pabst, Christoph Quix, Christian Zaschke, Oliver Schumacher (2018):
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[Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture](https://doi.org/10.5281/zenodo.1441011).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1441011](https://doi.org/10.5281/zenodo.1441011)
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Stian Soiland-Reyes, Farah Zaib Khan, Richard O. Sinnott, Andrew Lonie, Michael R Crusoe and Carole Goble:
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[Capturing interoperable reproducible workflows with Common Workflow Language](https://doi.org/10.5281/zenodo.1312623)_ (submitted as article)
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_At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Stian Soiland-Reyes, Farah Zaib Khan, Richard O. Sinnott, Andrew Lonie, Michael R Crusoe, Carole Goble (2018):
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[Capturing interoperable reproducible workflows with Common Workflow Language](https://doi.org/10.5281/zenodo.1312623).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1312623](https://doi.org/10.5281/zenodo.1312623)
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Kristi Holmes, Karen Gutzman, Patricia Smith, David Eichmann and Melissa Haendel:
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[Making it count: a computational approach to attribution](https://doi.org/10.5281/zenodo.1312651)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Kristi Holmes, Karen Gutzman, Patricia Smith, David Eichmann, Melissa Haendel (2018):
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[Making it count: a computational approach to attribution](https://doi.org/10.5281/zenodo.1312651).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1312651](https://doi.org/10.5281/zenodo.1312651)
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Carole Goble, Stian Soiland-Reyes and Sean Bechhofer:
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[Research Object Community Update](https://doi.org/10.5281/zenodo.1313066)
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Carole Goble, Stian Soiland-Reyes, Sean Bechhofer (2018):
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[Research Object Community Update](https://doi.org/10.5281/zenodo.1313066).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1313066 ](https://doi.org/10.5281/zenodo.1313066)
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Paolo Manghi, Michele Manunta, Miriam Baglioni, Alessia Bardi, Francesco Casu, Claudio De Luca and Argiro Kokogiannaki:
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[Enabling Open Science publishing for Research Infrastructures via OpenAIRE: The EPOS use-case](https://doi.org/10.5281/zenodo.1412509) _(submitted as article)
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_At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Paolo Manghi, Michele Manunta, Miriam Baglioni, Alessia Bardi, Francesco Casu, Claudio De Luca, Argiro Kokogiannaki (2018):
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[Enabling Open Science publishing for Research Infrastructures via OpenAIRE: The EPOS use-case](https://doi.org/10.5281/zenodo.1412509).
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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[https://doi.org/10.5281/zenodo.1412509](https://doi.org/10.5281/zenodo.1412509)
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## Accepted for poster/demo
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_These submissions have been accepted for poster/demo session and lightning talks at RO2018:_
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Edgar Garriga Nogales, Paolo Di Tommaso and Cedric Notredame (2018):
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[Nextflow integration for the Research Object Specification](https://doi.org/10.5281/zenodo.1323831)Poster.
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Edgar Garriga Nogales, Paolo Di Tommaso, Cedric Notredame (2018):
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[Nextflow integration for the Research Object Specification](https://doi.org/10.5281/zenodo.1323831). Poster.
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Abstract: [https://doi.org/10.5281/zenodo.1323831](https://doi.org/10.5281/zenodo.1323831)
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David De Roure, Graham Klyne, Kevin Page, John Pybus, David M. Weigl, Pip Willcox (2018):
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[Digital Music Objects: Research Objects for Music](https://doi.org/10.5281/zenodo.1442453) Poster.
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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David De Roure, Graham Klyne, Kevin Page, John Pybus, David M. Weigl, Pip Willcox (2018):
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[Digital Music Objects: Research Objects for Music](https://doi.org/10.5281/zenodo.1442453). Poster.
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At _Workshop on Research Objects (RO 2018)_, 29 Oct 2018, Amsterdam, Netherlands.
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Abstract: [https://doi.org/10.5281/zenodo.1442453](https://doi.org/10.5281/zenodo.1442453)
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