Clean up DynamicalSystems[Base] dependency (#12)

ReubenJ · web-flow · commit 1a0c725737db · 2025-02-06T18:43:02.000+01:00
diff --git a/Project.toml b/Project.toml
@@ -6,7 +6,7 @@ version = "0.2.0"
 [deps]
 AbstractTrees = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-DynamicalSystems = "61744808-ddfa-5f27-97ff-6e42cc95d634"
+DynamicalSystemsBase = "6e36e845-645a-534a-86f2-f5d4aa5a06b4"
 FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
 HerbConstraints = "1fa96474-3206-4513-b4fa-23913f296dfc"
@@ -22,7 +22,7 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 [compat]
 AbstractTrees = "0.4.5"
 DocStringExtensions = "0.9.3"
-DynamicalSystems = "3"
+DynamicalSystemsBase = "3.13.2"
 FileIO = "1"
 Graphs = "1.12"
 HerbConstraints = "0.2.4"
@@ -32,6 +32,6 @@ HerbSearch = "0.4.1"
 MLStyle = "0.4.17"
 MetaGraphsNext = "0.7"
 Random = "1.10"
-SoleLogics = "0.12"
+SoleLogics = "0.12.0"
 Statistics = "1.10"
 julia = "1.6"
diff --git a/src/GraphDynamicalSystems.jl b/src/GraphDynamicalSystems.jl
@@ -1,9 +1,6 @@
 module GraphDynamicalSystems
 
 using DocStringExtensions
-using DynamicalSystems
-using MetaGraphsNext
-using SoleLogics
 
 
 include("boolean_networks.jl")
diff --git a/src/boolean_networks.jl b/src/boolean_networks.jl
@@ -6,7 +6,7 @@ module BooleanNetworks
 
 using DocStringExtensions
 using MetaGraphsNext: MetaGraph, add_edge!, SimpleDiGraph, nv, labels
-using DynamicalSystems: ArbitrarySteppable
+using DynamicalSystemsBase: ArbitrarySteppable
 using SoleLogics:
     Formula,
     Atom,
diff --git a/src/qualitative_networks.jl b/src/qualitative_networks.jl
@@ -1,12 +1,13 @@
-import DynamicalSystems: get_state, set_state!
+import DynamicalSystemsBase: get_state, set_state!
 
 using AbstractTrees: Leaves
+using DynamicalSystemsBase: ArbitrarySteppable
+using HerbConstraints: addconstraint!, DomainRuleNode, VarNode, Ordered, Forbidden
 using HerbCore: AbstractGrammar, RuleNode, get_rule
 using HerbGrammar: add_rule!, rulenode2expr, @csgrammar
-using HerbConstraints: addconstraint!, DomainRuleNode, VarNode, Ordered, Forbidden
-using HerbSearch
+using HerbSearch: rand
 using MLStyle: @match
-using MetaGraphsNext: MetaGraph, SimpleDiGraph, add_edge!, nv
+using MetaGraphsNext: MetaGraph, SimpleDiGraph, add_edge!, nv, labels
 
 base_qn_grammar = @csgrammar begin
     Val = Val + Val
diff --git a/test/Project.toml b/test/Project.toml
@@ -1,6 +1,6 @@
 [deps]
 Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
-DynamicalSystems = "61744808-ddfa-5f27-97ff-6e42cc95d634"
+DynamicalSystemsBase = "6e36e845-645a-534a-86f2-f5d4aa5a06b4"
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
 HerbCore = "2b23ba43-8213-43cb-b5ea-38c12b45bd45"
 JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
diff --git a/test/test-bn.jl b/test/test-bn.jl
@@ -1,5 +1,5 @@
 using MetaGraphsNext: nv, MetaGraph
-using DynamicalSystems: trajectory
+using DynamicalSystemsBase: trajectory
 using SoleLogics: cnf, AbstractSyntaxStructure, LeftmostLinearForm, ∧
 
 @testset "Boolean Network Sampling" begin
diff --git a/test/test-qn.jl b/test/test-qn.jl
@@ -1,5 +1,4 @@
-using DynamicalSystems
-using GraphDynamicalSystems
+using DynamicalSystemsBase: step!, get_state, set_state!
 using Graphs: ne, nv
 
 @testset "QN Grammar Creation" begin
