ProtScout/pyproject.toml at main · Robaina/ProtScout · GitHub

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[tool.poetry]
name = "protscout"
version = "0.1.0"
description = "A Python package to rank protein sequences based on a suite of AI-predicted protein properties"
authors = ["Semidán Robaina-Estévez <semidan.robaina@gmail.com>"]
license = "GPL-3.0"
readme = "README.md"
packages = [{ include = "protscout", from = "src" }]
include = [
    { path = "src/protscout/*.sh", format = ["sdist", "wheel"] }
]
homepage = "https://github.com/Robaina/ProtScout"
repository = "https://github.com/Robaina/ProtScout"
documentation = "https://github.com/Robaina/ProtScout"
keywords = [
    "protein-engineering",
    "protein-design",
    "machine-learning",
    "bioinformatics",
    "computational-biology",
    "protein-properties",
    "protein-ranking",
    "sequence-analysis",
    "deep-learning",
    "protein-stability",
    "enzyme-engineering",
    "protein-language-models",
    "protein-structure",
    "protein-optimization",
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
]

[tool.poetry.dependencies]
python = "^3.8"
click = "^8.0"
pyyaml = "^6.0"
rich = "^10.0"
psutil = "^5.8"

[tool.poetry.group.dev.dependencies]
pytest = "^7.4.0"
pytest-cov = "^4.1.0"
black = "^23.3.0"
isort = "^5.12.0"
mypy = "^1.4.0"
ruff = "^0.0.275"
pre-commit = "^3.3.3"
mkdocs = "^1.4.3"
mkdocs-material = "^9.1.18"
mkdocstrings = { extras = ["python"], version = "^0.22.0" }

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.poetry.scripts]
protscout = "protscout.cli:cli"

[tool.black]
line-length = 88
target-version = ['py38']
include = '\.pyi?$'

[tool.isort]
profile = "black"
multi_line_output = 3
line_length = 88

[tool.mypy]
python_version = "3.8"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true

[tool.ruff]
select = ["E", "F", "B", "I"]
ignore = ["E501"]
line-length = 88
target-version = "py38"

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = "test_*.py"
addopts = "--cov=protscout --cov-report=html --cov-report=term"