Fix input_pdb path in design_macrocyclic_binder and fix incorrect call to res in test_diffusion.py

Author: woodsh17

examples/design_macrocyclic_binder.sh

@@ -9,7 +9,7 @@
 inference.output_prefix=example_outputs/diffused_binder_cyclic2 \
 inference.num_designs=2 \
 'contigmap.contigs=[12-18 A3-117/0]' \
-inference.input_pdb=/input_pdbs/7zkr_GABARAP.pdb \
+inference.input_pdb=./input_pdbs/7zkr_GABARAP.pdb \
 inference.cyclic=True \
 diffuser.T=50 \
 inference.cyc_chains='a' \

tests/test_diffusion.py

@@ -53,7 +53,7 @@ def setUp(self):
         for bash_file in sorted( glob.glob(f"{self.out_f}/*.sh"), reverse=False):
             test_name = os.path.basename(bash_file)[:-len('.sh')]
             res, output = execute(f"Running {test_name}", f'bash {bash_file}', return_='tuple', add_message_and_command_line_to_output=True)
-            self.exec_status[test_name] = (exit_code, output)
+            self.exec_status[test_name] = (res, output)
 
             self.results[test_name] = dict(
                 state = 'failed' if res else 'passed',