Rename app specification functions to spec

Author: lyskov

src/app.rs

@@ -82,14 +82,14 @@ impl RunSpec {
 impl App {
     pub fn run_spec(self, app_args: Vec<String>) -> RunSpec {
         match self {
-            App::Score => score::score(app_args),
-            App::Rosetta => rosetta::rosetta(app_args),
-            App::PyRosetta => pyrosetta::pyrosetta(app_args),
-            App::Rfdiffusion => rfdiffusion::rfdiffusion(app_args),
-            App::Proteinmpnn => proteinmpnn::proteinmpnn(app_args),
-            App::ProteinmpnnScript => proteinmpnn_script::proteinmpnn_script(app_args),
-            App::Ligandmpnn => ligandmpnn::ligandmpnn(app_args),
-            App::Picap => picap::picap(app_args),
+            App::Score => score::spec(app_args),
+            App::Rosetta => rosetta::spec(app_args),
+            App::PyRosetta => pyrosetta::spec(app_args),
+            App::Rfdiffusion => rfdiffusion::spec(app_args),
+            App::Proteinmpnn => proteinmpnn::spec(app_args),
+            App::ProteinmpnnScript => proteinmpnn_script::spec(app_args),
+            App::Ligandmpnn => ligandmpnn::spec(app_args),
+            App::Picap => picap::spec(app_args),
         }
     }
 }

src/app/ligandmpnn.rs

@@ -1,6 +1,6 @@
 use crate::app::RunSpec;
 
-pub fn ligandmpnn(mut app_args: Vec<String>) -> RunSpec {
+pub fn spec(mut app_args: Vec<String>) -> RunSpec {
     app_args.splice(
         0..0,
         [

src/app/picap.rs

@@ -1,6 +1,6 @@
 use crate::app::RunSpec;
 
-pub fn picap(mut app_args: Vec<String>) -> RunSpec {
+pub fn spec(mut app_args: Vec<String>) -> RunSpec {
     app_args.splice(
         0..0,
         [

src/app/proteinmpnn.rs

@@ -1,6 +1,6 @@
 use crate::app::RunSpec;
 
-pub fn proteinmpnn(mut app_args: Vec<String>) -> RunSpec {
+pub fn spec(mut app_args: Vec<String>) -> RunSpec {
     app_args.splice(0..0, ["--out_folder=/w".into()]);
     RunSpec::new("rosettacommons/proteinmpnn", app_args).working_dir("/w")
 }

src/app/proteinmpnn_script.rs

@@ -1,6 +1,6 @@
 use crate::app::RunSpec;
 
-pub fn proteinmpnn_script(mut app_args: Vec<String>) -> RunSpec {
+pub fn spec(mut app_args: Vec<String>) -> RunSpec {
     assert!(
         app_args.is_empty() || app_args[0].starts_with("-"),
         "ProteinmpnnScript arguments must include a script name as first argument"

src/app/pyrosetta.rs

@@ -1,6 +1,6 @@
 use crate::app::RunSpec;
 
-pub fn pyrosetta(mut app_args: Vec<String>) -> RunSpec {
+pub fn spec(mut app_args: Vec<String>) -> RunSpec {
     app_args.insert(0, "python".into());
     RunSpec::new("rosettacommons/rosetta:serial", app_args).working_dir("/w")
 }

src/app/rfdiffusion.rs

@@ -1,6 +1,6 @@
 use crate::app::RunSpec;
 
-pub fn rfdiffusion(mut app_args: Vec<String>) -> RunSpec {
+pub fn spec(mut app_args: Vec<String>) -> RunSpec {
     app_args.splice(
         0..0,
         [

src/app/rosetta.rs

@@ -1,5 +1,5 @@
 use crate::app::RunSpec;
 
-pub fn rosetta(app_args: Vec<String>) -> RunSpec {
+pub fn spec(app_args: Vec<String>) -> RunSpec {
     RunSpec::new("rosettacommons/rosetta:serial", app_args).working_dir("/w")
 }

src/app/score.rs

@@ -1,6 +1,6 @@
 use crate::app::RunSpec;
 
-pub fn score(mut app_args: Vec<String>) -> RunSpec {
+pub fn spec(mut app_args: Vec<String>) -> RunSpec {
     app_args.insert(0, "score".into());
     RunSpec::new("rosettacommons/rosetta:serial", app_args).working_dir("/w")
 }