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I'm now trying to label CDR in my antibody structure using identify_cdr_cluster command in rosetta
I heard that Pyigclassify2 database can be used in rosetta and to use Pyigclassify2 DB
just download pyigclassify2 DB and put all of them in rosetta/main/database/sampling/antibodies.
but even after I download and put pyigclassify2 DB into rosetta/main/database/sampling/antibodies,
identify_cdr_cluster used rosetta/main/database/sampling/antibodies/cluster_center_dihedrals.txt which was used without pyigclassify2 DB
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Hi all
I'm now trying to label CDR in my antibody structure using identify_cdr_cluster command in rosetta
I heard that Pyigclassify2 database can be used in rosetta and to use Pyigclassify2 DB
just download pyigclassify2 DB and put all of them in rosetta/main/database/sampling/antibodies.
but even after I download and put pyigclassify2 DB into rosetta/main/database/sampling/antibodies,
identify_cdr_cluster used rosetta/main/database/sampling/antibodies/cluster_center_dihedrals.txt which was used without pyigclassify2 DB
the downloaded pyigclassify2 DB is like below
pyig_ab_mmcif.tar.gz pyig_cluster_mmcif.tar.gz pyig_domain.fasta pyig_readme.txt
pyig_cdr_data.txt.gz pyig_domain_data.txt.gz pyig_mmcif.tar.gz
to use pyigclassify2 in rosetta, should I do some kind of editing of this file ?
or is there any other thing that I miss ?
Thanks in advance
reagards
croshong
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