Adds CI tests to the github runners for the emap-setup directory

Adding emap-setup tests to CI, tidy up and update tests and coverage.

Author: thompson318

.github/workflows/emap-setup-tests.yaml

@@ -0,0 +1,47 @@
+name: emap setup tests
+on:
+  push:
+    branches: [ main, develop ]
+  pull_request:
+    branches: [ main, develop, sk/waveform-dev ]
+  repository_dispatch:
+permissions:
+  contents: read
+  checks: write
+  id-token: write
+  pull-requests: read # needed by paths-filter
+jobs:
+  filter:
+    runs-on: ubuntu-latest
+    outputs:
+      emap-setup: ${{ steps.filter.outputs.emap-setup }}
+    steps:
+      - uses: actions/checkout@v3
+      - uses: dorny/paths-filter@v2
+        id: filter
+        with:
+          filters: |
+            emap-setup:
+              - '.github/**'
+              - 'emap-checker.xml'
+              - 'emap-setup/**'
+  emap-setup-tests:
+    needs: [filter]
+    runs-on: ubuntu-latest
+    env:
+       GITHUB_TOKEN: ${{ secrets.GH_PAT_READ_AND_COMMENT }}
+    if: needs.filter.outputs.emap-setup == 'true'
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+          cache: "pip"
+      - name: Install Python Dependencies
+        run: | 
+          python -m pip install -r emap-setup/requirements.txt
+      - name: Run tests
+        run: |
+          cd emap-setup
+          pytest  --cov=./ --cov-report=term

emap-setup/.coveragerc

@@ -0,0 +1,4 @@
+[run]
+omit = 
+    __init__.py
+    tests/*

emap-setup/emap_runner/setup/repos.py

@@ -1,4 +1,5 @@
 import git
+import os
 import shutil
 
 from pathlib import Path
@@ -118,6 +119,9 @@ def path(self) -> Path:
     @property
     def https_git_url(self) -> str:
         """Generate a https URL. e.g. https://github.com/../emap-setup.git"""
+        gh_token = os.environ.get('GITHUB_TOKEN', False)
+        if gh_token:
+            return f"https://{gh_token}@{self._base_git_url}/{self.name}"
         return f"https://{self._base_git_url}/{self.name}"
 
     @property

emap-setup/requirements.in

@@ -0,0 +1,7 @@
+pytest
+pytest-cov
+PyYAML
+gitpython
+black
+tqdm
+setuptools

emap-setup/requirements.txt

@@ -1,5 +1,57 @@
-pytest
-PyYAML
-gitpython
-black
-tqdm
+# This file was autogenerated by uv via the following command:
+#    uv pip compile requirements.in -o requirements.txt
+black==25.9.0
+    # via -r requirements.in
+click==8.3.0
+    # via black
+coverage==7.10.7
+    # via pytest-cov
+exceptiongroup==1.3.0
+    # via pytest
+gitdb==4.0.12
+    # via gitpython
+gitpython==3.1.45
+    # via -r requirements.in
+iniconfig==2.1.0
+    # via pytest
+mypy-extensions==1.1.0
+    # via black
+packaging==25.0
+    # via
+    #   black
+    #   pytest
+pathspec==0.12.1
+    # via black
+platformdirs==4.4.0
+    # via black
+pluggy==1.6.0
+    # via
+    #   pytest
+    #   pytest-cov
+pygments==2.19.2
+    # via pytest
+pytest==8.4.2
+    # via
+    #   -r requirements.in
+    #   pytest-cov
+pytest-cov==7.0.0
+    # via -r requirements.in
+pytokens==0.1.10
+    # via black
+pyyaml==6.0.2
+    # via -r requirements.in
+setuptools==80.9.0
+    # via -r requirements.in
+smmap==5.0.2
+    # via gitdb
+tomli==2.2.1
+    # via
+    #   black
+    #   coverage
+    #   pytest
+tqdm==4.67.1
+    # via -r requirements.in
+typing-extensions==4.15.0
+    # via
+    #   black
+    #   exceptiongroup

emap-setup/tests/data/config/config/.empty

@@ -6,7 +6,7 @@ EMAP_PROJECT_NAME:
   only_emap_setup
 
 repositories:
-  emap_documentation:
+  internal_emap_documentation:
     branch:  main
 # For testing outside the GAE, you can enable a fake UDS
 fake_uds: