diff --git a/.env.sample b/.env.sample index b833ac2..78d614c 100644 --- a/.env.sample +++ b/.env.sample @@ -4,6 +4,7 @@ LOG_LEVEL=INFO HOST_DATA_FOLDER= CONTAINER_DATA_FOLDER="/data" +DATA_FOLDER= http_proxy= https_proxy= @@ -16,6 +17,7 @@ MARKER_API_PORT= SPARROW_API_PORT=8001 # hard-coded in sparrow API DOCLING_API_PORT= PADDLEOCR_API_PORT= +KREUZBERG_API_PORT= # Source PostgreSQL instance POSTGRES_SOURCE_USER=postgres diff --git a/docker-compose.yml b/docker-compose.yml index 70008f0..b9fec37 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -176,6 +176,40 @@ services: retries: 3 start_period: 30s + kreuzberg: + profiles: [kreuzberg] + build: + context: packages/ocr/kreuzberg + dockerfile: Dockerfile + args: + <<: *build-args-common + KREUZBERG_API_PORT: ${KREUZBERG_API_PORT} + environment: + <<: [*proxy-common, *common-env] + DATA_FOLDER: /data + KREUZBERG_API_PORT: ${KREUZBERG_API_PORT} + env_file: + - ./.env + ports: + - "${KREUZBERG_API_PORT}:${KREUZBERG_API_PORT}" + volumes: + - ${PWD}/${DATA_FOLDER}:/data + networks: + - pyonb_ocr_api + healthcheck: + test: + [ + "CMD", + "curl", + "-X", + "GET", + "http://localhost:${KREUZBERG_API_PORT}/health", + ] + interval: 10s + timeout: 3s + retries: 3 + start_period: 30s + ocr-forwarding-api: build: context: src/api diff --git a/packages/ocr/kreuzberg/Dockerfile b/packages/ocr/kreuzberg/Dockerfile new file mode 100644 index 0000000..92e7851 --- /dev/null +++ b/packages/ocr/kreuzberg/Dockerfile @@ -0,0 +1,30 @@ +FROM ghcr.io/astral-sh/uv:python3.13-bookworm AS app + +SHELL ["/bin/bash", "-o", "pipefail", "-e", "-u", "-x", "-c"] + +WORKDIR /app +ENV PYTHONDONTWRITEBYTECODE=1 +ENV PYTHONUNBUFFERED=1 + +RUN apt-get update && apt-get install -y --no-install-recommends \ + libgl1 \ + libglib2.0-0 \ + libgomp1 \ + libsm6 \ + libxext6 \ + libxrender-dev \ + pandoc \ + tesseract-ocr \ + tesseract-ocr-eng \ + && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* + +COPY ./pyproject.toml ./README.md . +COPY ./src src/ + +RUN uv venv +RUN --mount=type=cache,target=/root/.cache/uv,sharing=locked uv sync --no-editable --no-dev + +# make uvicorn etc available +ENV PATH="/app/.venv/bin:$PATH" + +CMD uvicorn pyonb_kreuzberg.api:app --host 0.0.0.0 --port "$KREUZBERG_API_PORT" --workers 4 --reload --use-colors diff --git a/packages/ocr/kreuzberg/README.md b/packages/ocr/kreuzberg/README.md new file mode 100644 index 0000000..01d899a --- /dev/null +++ b/packages/ocr/kreuzberg/README.md @@ -0,0 +1,52 @@ +# Instructions + +Before using the `kreuzberg` API for OCR, you will need to set the `KREUZBERG_API_PORT` +environment variable in the top-level `.env` file. + +## Python + +First install the `kreuzberg` API. From the top-level `pyonb` directory: + +```shell +uv sync -extra kreuzberg +``` + +Then start the `kreuzberg` API: + +```shell +python src/pyonb_kreuzberg/api.py +``` + +You can then use `curl` to send a PDF to the API: + +```shell +curl -v -X POST http://127.0.0.1:8116/extract \ + -F "file_upload=@document.pdf" \ + -H "accept: application/json" +``` + +Note, this assumes you have set `KREUZBERG_API_PORT=8116`. + +Currently, this returns the response from the +[`kreuzberg` API](https://kreuzberg.dev/user-guide/api-server/#extract-files) +directly, rather than the standard `pyonb` response. + +## Docker Compose + +You will need to define the `OCR_FORWARDING_API_PORT` in the `.env` file. + +Then, spin up the `ocr-forwarding-api` and `kreuzberg` services: + +```shell +docker-compose --profile kreuzberg up --build --detach +``` + +You can then use `curl` to send a PDF to the forwarding API: + +```shell +curl -v -X POST http://127.0.0.1:8110/kreuzberg-ocr/inference_single \ + -F "file_upload=@document.pdf" \ + -H "accept: application/json" +``` + +Note, this assumes you have set `OCR_FORWARDING_API_PORT` to `8110`. diff --git a/packages/ocr/kreuzberg/pyproject.toml b/packages/ocr/kreuzberg/pyproject.toml new file mode 100644 index 0000000..86beaaa --- /dev/null +++ b/packages/ocr/kreuzberg/pyproject.toml @@ -0,0 +1,14 @@ +[build-system] +build-backend = "hatchling.build" +requires = ["hatchling"] + +[project] +dependencies = [ + "kreuzberg[api]==3.13.3", + "uvicorn", +] +description = "pyonb wrapper around kreuzberg" +name = "pyonb-kreuzberg" +readme = "README.md" +requires-python = ">=3.11" +version = "0.1.0" diff --git a/packages/ocr/kreuzberg/src/pyonb_kreuzberg/__init__.py b/packages/ocr/kreuzberg/src/pyonb_kreuzberg/__init__.py new file mode 100644 index 0000000..76791dd --- /dev/null +++ b/packages/ocr/kreuzberg/src/pyonb_kreuzberg/__init__.py @@ -0,0 +1 @@ +"""Package for converting PDFs to structured text using Kreuzberg OCR.""" diff --git a/packages/ocr/kreuzberg/src/pyonb_kreuzberg/api.py b/packages/ocr/kreuzberg/src/pyonb_kreuzberg/api.py new file mode 100644 index 0000000..310c86c --- /dev/null +++ b/packages/ocr/kreuzberg/src/pyonb_kreuzberg/api.py @@ -0,0 +1,40 @@ +"""API for Kreuzberg OCR.""" + +import os + +import uvicorn +from kreuzberg._api.main import ( + KreuzbergError, + Litestar, + OpenTelemetryConfig, + OpenTelemetryPlugin, + StructLoggingConfig, + exception_handler, + general_exception_handler, + get_configuration, + handle_files_upload, + health_check, +) + +KREUZBERG_API_PORT = int(os.getenv("KREUZBERG_API_PORT", default="8116")) + +app = Litestar( + route_handlers=[handle_files_upload, health_check, get_configuration], + request_max_body_size=100_000_000, + plugins=[OpenTelemetryPlugin(OpenTelemetryConfig())], + logging_config=StructLoggingConfig(), + exception_handlers={ + KreuzbergError: exception_handler, + Exception: general_exception_handler, + }, +) + +if __name__ == "__main__": + uvicorn.run( + app, + host="127.0.0.1", + port=KREUZBERG_API_PORT, + workers=4, + reload=True, + use_colors=True, + ) diff --git a/pyproject.toml b/pyproject.toml index 9c4772d..80d2b02 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,6 +49,8 @@ optional-dependencies = {dev = [ "mkdocs-material", "mkdocstrings", "mkdocstrings-python", +], kreuzberg = [ + "pyonb-kreuzberg", ], test = [ "pytest", "pytest-cov", @@ -149,3 +151,11 @@ env.docs = {commands = [ gh.python."3.11" = ["py311"] gh.python."3.12" = ["py312"] gh.python."3.13" = ["py313"] + +[tool.uv.sources] +pyonb-kreuzberg = {workspace = true} + +[tool.uv.workspace] +members = [ + "packages/ocr/*", +] diff --git a/src/api/app/main.py b/src/api/app/main.py index ab77b8c..cf02dbf 100644 --- a/src/api/app/main.py +++ b/src/api/app/main.py @@ -6,10 +6,11 @@ from fastapi import FastAPI, status from fastapi.responses import JSONResponse, RedirectResponse -from .routers import docling, marker, paddleocr, sparrow +from .routers import docling, kreuzberg, marker, paddleocr, sparrow +_today = datetime.datetime.now(datetime.UTC).strftime("%Y_%m_%d") # type: ignore[attr-defined] # mypy complains that 'Module has no attribute "UTC"' logging.basicConfig( - filename="pyonb-" + datetime.datetime.now(datetime.UTC).strftime("%Y_%m_%d") + ".log", + filename=f"pyonb-{_today}.log", format="%(asctime)s %(message)s", filemode="a", ) @@ -23,6 +24,7 @@ app.include_router(marker.router) app.include_router(paddleocr.router) app.include_router(docling.router) +app.include_router(kreuzberg.router) @app.get("/", include_in_schema=False) diff --git a/src/api/app/routers/kreuzberg.py b/src/api/app/routers/kreuzberg.py new file mode 100644 index 0000000..21e41cd --- /dev/null +++ b/src/api/app/routers/kreuzberg.py @@ -0,0 +1,84 @@ +"""Routers for Kreuzberg OCR.""" + +import logging +import os +import time +from typing import Annotated, Any + +import aiohttp +from fastapi import APIRouter, File, UploadFile, status +from fastapi.responses import JSONResponse + +# Creating an object +logger = logging.getLogger() + +router = APIRouter() + +KREUZBERG_API_PORT = os.getenv("KREUZBERG_API_PORT") + + +@router.get("/kreuzberg/health") +async def healthcheck() -> dict[str, Any]: + """Test aliveness endpoint for Kreuzberg.""" + logger.info("[GET] /kreuzberg/health") + url = f"http://kreuzberg:{KREUZBERG_API_PORT}/health" + + try: + async with aiohttp.ClientSession(timeout=aiohttp.ClientTimeout(total=60 * 60)) as session: # noqa: SIM117 + async with session.get(url) as response: + response.raise_for_status() + except aiohttp.ClientError: + logger.exception("Failed to connect to kreuzberg service") + raise + + return JSONResponse( + status_code=status.HTTP_200_OK, + content={"service": "kreuzberg", "status": "healthy"}, + ) + + +@router.post("/kreuzberg-ocr/inference_single", status_code=status.HTTP_200_OK) +async def inference_single_doc(file_upload: Annotated[UploadFile, File()] = None) -> JSONResponse: + """ + Runs Kreuzberg OCR inference on a single document. + + UploadFile object forwarded onto inference API. + """ + logger.info("[POST] /kreuzberg-ocr/extract") + url = f"http://kreuzberg:{KREUZBERG_API_PORT}/extract" # fwd request to kreuzberg service + + data = aiohttp.FormData() + data.add_field( + "data", # field name expected by Kreuzberg's /extract API + file_upload.file, + filename=file_upload.filename, + content_type=file_upload.content_type, + ) + headers = {"accept": "application/json"} + + logger.info("post request - url: %s", url) + logger.info("post request - data: %s", data) + logger.info("post request - headers: %s", headers) + + t1 = time.perf_counter() + try: + async with aiohttp.ClientSession(timeout=aiohttp.ClientTimeout(total=60 * 60)) as session: # noqa: SIM117 + async with session.post(url, data=data, headers=headers) as response: + response.raise_for_status() + ocr_results = await response.json() + except aiohttp.ClientError: + logger.exception("Request Exception") + raise + t2 = time.perf_counter() + + # Kreuzberg's /extract API expects a list of documents and always returns a list of extracted text + # We only ever extract and return content for a single document + ocr_result = ocr_results[0]["content"] + + response_json = { + "filename": str(file_upload.filename), + "duration_in_second": t2 - t1, + "ocr-result": ocr_result, + } + + return JSONResponse(status_code=status.HTTP_200_OK, content=response_json) diff --git a/src/api/requirements.txt b/src/api/requirements.txt index ee3d94b..0277a1f 100644 --- a/src/api/requirements.txt +++ b/src/api/requirements.txt @@ -1,3 +1,4 @@ fastapi[standard] uvicorn requests +aiohttp diff --git a/tests/.env.tests b/tests/.env.tests index b41b87f..5071636 100644 --- a/tests/.env.tests +++ b/tests/.env.tests @@ -4,6 +4,7 @@ LOG_LEVEL=INFO HOST_DATA_FOLDER="/absolute/path/to/tests/data/single_synthetic_doc" CONTAINER_DATA_FOLDER="/data" +DATA_FOLDER="tests/data/single_synthetic_doc" http_proxy= https_proxy= @@ -16,6 +17,7 @@ MARKER_API_PORT=8112 SPARROW_API_PORT=8001 # hard-coded in sparrow API PADDLEOCR_API_PORT=8114 DOCLING_API_PORT=8115 +KREUZBERG_API_PORT=8116 # Source PostgreSQL instance POSTGRES_SOURCE_USER=postgres diff --git a/tests/api/test_app.py b/tests/api/test_app.py index c742518..d88af0f 100644 --- a/tests/api/test_app.py +++ b/tests/api/test_app.py @@ -17,7 +17,14 @@ def test_local_start_api_and_healthy(ocr_forwarding_api_port: str) -> None: @pytest.mark.parametrize( "check_container_healthy", - ["pyonb-ocr-forwarding-api-1", "pyonb-marker-1", "pyonb-sparrow-1", "pyonb-paddleocr-1", "pyonb-docling-1"], + [ + "pyonb-ocr-forwarding-api-1", + "pyonb-marker-1", + "pyonb-sparrow-1", + "pyonb-paddleocr-1", + "pyonb-docling-1", + "pyonb-kreuzberg-1", + ], indirect=True, ) def test_check_services(check_container_healthy: bool) -> None: diff --git a/tests/api/test_routers.py b/tests/api/test_routers.py index 7ffd98e..c1b21bd 100644 --- a/tests/api/test_routers.py +++ b/tests/api/test_routers.py @@ -41,6 +41,13 @@ def test_router_paddleocr(ocr_forwarding_api_port: str) -> None: assert response.json() == {"service": "paddleocr", "status": "healthy"} +def test_router_kreuzberg(ocr_forwarding_api_port: str) -> None: + """Test healthcheck for kreuzberg.""" + response = requests.get(f"http://127.0.0.1:{ocr_forwarding_api_port}/kreuzberg/health", timeout=5) + assert response.status_code == requests.codes.ok + assert response.json() == {"service": "kreuzberg", "status": "healthy"} + + def test_inference_single_file_upload_marker(ocr_forwarding_api_port: str, single_pdf_filepath: Path) -> None: """Test PDF conversion using marker with single file endpoint.""" url = f"http://127.0.0.1:{ocr_forwarding_api_port}/marker/inference_single" @@ -104,6 +111,21 @@ def test_inference_single_file_upload_paddleocr(ocr_forwarding_api_port: str, si assert response.json()["filename"] in single_pdf_filename +def test_inference_single_file_upload_kreuzberg(ocr_forwarding_api_port: str, single_pdf_filepath: Path) -> None: + """Test PDF conversion using kreuzberg with single file endpoint.""" + url = f"http://127.0.0.1:{ocr_forwarding_api_port}/kreuzberg-ocr/inference_single" + + single_pdf_filename = single_pdf_filepath.name + + with Path.open(single_pdf_filepath, "rb") as f: + files = {"file_upload": (single_pdf_filename, f, "application/pdf")} + response = requests.post(url, files=files, timeout=60 * 60) + + assert response.status_code == requests.codes.ok + assert response.json()["duration_in_second"] >= 0 + assert response.json()["filename"] == single_pdf_filename + + def test_inference_on_folder_marker(ocr_forwarding_api_port: str) -> None: """ Test PDF conversion using marker pointed at a folder of files. diff --git a/uv.lock b/uv.lock index 78f0139..da3e927 100644 --- a/uv.lock +++ b/uv.lock @@ -1,17 +1,113 @@ version = 1 -revision = 1 requires-python = ">=3.11" resolution-markers = [ - "python_full_version >= '3.12' and platform_machine == 'x86_64' and 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