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Merge pull request #876 from SCIInstitute/brettEdits
Brett edits for demo networks
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src/ExampleNets/BrainStimulator/patch_config_P.srn5

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@@ -1226,7 +1226,7 @@
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<name>FaceTransparency</name>
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<value>
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<which>3</which>
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<value>0</value>
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<value>1</value>
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</value>
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</second>
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</item>
@@ -1468,7 +1468,7 @@
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</item>
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</modules>
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<connections class_id="13" tracking_level="0" version="0">
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<count>38</count>
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<count>39</count>
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<item_version>0</item_version>
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<item class_id="14" tracking_level="0" version="0">
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<moduleId1_>AddKnownsToLinearSystem:15</moduleId1_>
@@ -1854,6 +1854,18 @@
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<id>0</id>
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</port2_>
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</item>
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<item>
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<moduleId1_>ShowField:23</moduleId1_>
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<port1_>
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<name>SceneGraph</name>
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<id>0</id>
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</port1_>
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<moduleId2_>ViewScene:26</moduleId2_>
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<port2_>
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<name>GeneralGeom</name>
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<id>2</id>
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</port2_>
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</item>
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<item>
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<moduleId1_>ShowField:24</moduleId1_>
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<port1_>
@@ -2108,8 +2120,34 @@
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</item>
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</modulePositions>
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<moduleNotes class_id="19" tracking_level="0" version="0">
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<count>0</count>
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<count>2</count>
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<item_version>0</item_version>
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<item class_id="20" tracking_level="0" version="0">
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<first>ShowField:24</first>
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<second class_id="21" tracking_level="0" version="0">
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:24pt; color:#ffffff;&quot;&gt;Patches&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Patches</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<item>
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<first>ShowField:25</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:24pt; color:#ffffff;&quot;&gt;Head&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Head</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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</moduleNotes>
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<connectionNotes>
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<count>0</count>

src/ExampleNets/FwdInvToolkit/activation-based-fem.srn5

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File mode changed.

src/ExampleNets/FwdInvToolkit/forward_problem.srn5

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Lines changed: 185 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2006,15 +2006,58 @@
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</item>
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</modulePositions>
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<moduleNotes class_id="18" tracking_level="0" version="0">
2009-
<count>6</count>
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<count>19</count>
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<item_version>0</item_version>
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<item class_id="19" tracking_level="0" version="0">
2012-
<first>CreateLatVol:4</first>
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<first>AddKnownsToLinearSystem:12</first>
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<second class_id="20" tracking_level="0" version="0">
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Apply Boundary Conditions&lt;/span&gt;&lt;/p&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Dirchlet Potential Vals on &lt;/span&gt;&lt;/p&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Heart Surface&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Apply Boundary Conditions
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Dirchlet Potential Vals on
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Heart Surface</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<item>
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<first>ClipFieldByFunction:21</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Remove Air From Mesh&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Remove Air From Mesh</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<item>
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<first>ClipFieldByFunction:22</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Remove Heart From Mesh&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Remove Heart From Mesh</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<item>
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<first>CreateLatVol:4</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-family:&apos;MS Shell Dlg 2&apos;; font-size:16pt; color:#ffffff;&quot;&gt;Adjust resolution of the problem&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Adjust resolution of the problem</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<item>
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<first>FairMesh:16</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Smooth Torso Surface&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Smooth Torso Surface</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<item>
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<first>GetDomainBoundary:7</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Isolate Torso Boundary&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Isolate Torso Boundary</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<first>GetFieldBoundary:15</first>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Isolate Torso Surface&lt;/span&gt;&lt;/p&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;With Solution Imposed&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Isolate Torso Surface
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With Solution Imposed</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<first>GetFieldData:11</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; color:#ffffff;&quot;&gt;Change Data Type&lt;/span&gt;&lt;/p&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; color:#ffffff;&quot;&gt;For Compuation&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Change Data Type
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For Compuation</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<first>GetMatrixSlice:24</first>
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<fontSize>13</fontSize>
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</second>
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<first>MapFieldDataFromSourceToDestination:23</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Define Boundary Condition&lt;/span&gt;&lt;/p&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Map Potential Data To&lt;/span&gt;&lt;/p&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Heart Surface Only&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Define Boundary Condition
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Map Potential Data To
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Heart Surface Only</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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<first>MapFieldDataFromSourceToDestination:25</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Interpolate Cardiac Data&lt;/span&gt;&lt;/p&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Into Torso&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Interpolate Cardiac Data
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Into Torso</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<first>MapFieldDataOntoElems:20</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Move Info To Nodes&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Move Info To Nodes</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<first>ReadField:0</first>
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<second>
@@ -2088,6 +2232,45 @@ for all time steps</noteText>
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<first>SetFieldData:14</first>
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<second>
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<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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p, li { white-space: pre-wrap; }
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&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
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&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Map Data to Geometry&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
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<noteText>Map Data to Geometry</noteText>
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<position>0</position>
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<fontSize>13</fontSize>
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</second>
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</item>
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<item>
2249+
<first>SetFieldData:3</first>
2250+
<second>
2251+
<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
2252+
&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
2253+
p, li { white-space: pre-wrap; }
2254+
&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
2255+
&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Map Data to Heart Geometry&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
2256+
<noteText>Map Data to Heart Geometry</noteText>
2257+
<position>0</position>
2258+
<fontSize>13</fontSize>
2259+
</second>
2260+
</item>
2261+
<item>
2262+
<first>SolveLinearSystem:13</first>
2263+
<second>
2264+
<noteHTML>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
2265+
&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
2266+
p, li { white-space: pre-wrap; }
2267+
&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:&apos;Lucida Grande&apos;; font-size:13pt; font-weight:400; font-style:normal;&quot;&gt;
2268+
&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-size:16pt; color:#ffffff;&quot;&gt;Compute Forward Solution&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</noteHTML>
2269+
<noteText>Compute Forward Solution</noteText>
2270+
<position>0</position>
2271+
<fontSize>13</fontSize>
2272+
</second>
2273+
</item>
20912274
</moduleNotes>
20922275
<connectionNotes>
20932276
<count>0</count>

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