Merge pull request #1732 from moritzdannhauer/TMS

TMS_modules

Author: dcwhite

src/Core/Algorithms/BrainStimulator/BiotSavartSolverAlgorithm.cc

@@ -0,0 +1,81 @@
+/*
+   For more information, please see: http://software.sci.utah.edu
+
+   The MIT License
+
+   Copyright (c) 2015 Scientific Computing and Imaging Institute,
+   University of Utah.
+
+   License for the specific language governing rights and limitations under
+   Permission is hereby granted, free of charge, to any person obtaining a
+   copy of this software and associated documentation files (the "Software"),
+   to deal in the Software without restriction, including without limitation
+   the rights to use, copy, modify, merge, publish, distribute, sublicense,
+   and/or sell copies of the Software, and to permit persons to whom the
+   Software is furnished to do so, subject to the following conditions:
+
+   The above copyright notice and this permission notice shall be included
+   in all copies or substantial portions of the Software.
+
+   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+   OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+   FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+   THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+   LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+   FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+   DEALINGS IN THE SOFTWARE.
+*/
+
+#ifndef ALGORITHMS_MATH_BiotSavartSolverAlgorithm_H
+#define ALGORITHMS_MATH_BiotSavartSolverAlgorithm_H
+
+#include <Core/Datatypes/Legacy/Field/Mesh.h>
+#include <Core/Datatypes/Legacy/Field/Field.h>
+#include <Core/Datatypes/Matrix.h>
+
+#include <Core/Algorithms/Base/AlgorithmBase.h>
+#include <Core/Algorithms/BrainStimulator/share.h>
+
+///@file BiotSavartSolverAlgorithm
+///@brief 
+///  
+///
+///@author
+/// Implementation: Petar Petrov for SCIRun 4.7
+/// Converted to SCIRun5 by Moritz Dannhauer
+///@details
+/// 
+///
+
+namespace SCIRun {
+namespace Core {
+namespace Algorithms {
+namespace BrainStimulator {
+
+ ALGORITHM_PARAMETER_DECL(Mesh);
+ ALGORITHM_PARAMETER_DECL(Coil);
+ ALGORITHM_PARAMETER_DECL(VectorBField);
+ ALGORITHM_PARAMETER_DECL(VectorAField);
+ ALGORITHM_PARAMETER_DECL(OutType);
+
+  class SCISHARE BiotSavartSolverAlgorithm : public AlgorithmBase
+  {
+  public:
+    BiotSavartSolverAlgorithm()
+    {
+     istep=0.0;
+     tfactor = 0;
+     addParameter(Parameters::OutType,0);
+    }
+    AlgorithmOutput run(const AlgorithmInput& input) const override;
+    bool run(FieldHandle mesh, FieldHandle coil, Datatypes::MatrixHandle &outdata, int outtype) const;
+
+  private:	
+    double istep;
+    unsigned int tfactor;
+  
+  };
+
+}}}}
+
+#endif

src/Core/Algorithms/BrainStimulator/BiotSavartSolverAlgorithm.h

@@ -32,6 +32,8 @@ SET(Algorithms_BrainStimulator_SRCS
   GenerateROIStatisticsAlgorithm.cc
   SetupRHSforTDCSandTMSAlgorithm.cc
   SimulateForwardMagneticFieldAlgorithm.cc
+  BiotSavartSolverAlgorithm.cc
+  ModelGenericCoilAlgorithm.cc
 )
 
 SET(Algorithms_BrainStimulator_HEADERS
@@ -40,6 +42,8 @@ SET(Algorithms_BrainStimulator_HEADERS
   GenerateROIStatisticsAlgorithm.h
   SetupRHSforTDCSandTMSAlgorithm.h
   SimulateForwardMagneticFieldAlgorithm.h
+  BiotSavartSolverAlgorithm.h
+  ModelGenericCoilAlgorithm.h
   share.h
 )