Merge pull request #51 from Sichao25/yus/deploy_doxygen

Create separate workflow for doxygen deployment

Author: cwsmith

.github/workflows/cmake.yml

@@ -19,13 +19,12 @@ jobs:
     # I think this is the minimal set needed for a public repo (https://github.com/github/codeql-action/pull/689).
     permissions:
       security-events: write
-      contents: write
 
     steps:
-    - name: Install Dependencies
+    - name: Install CMake
       run: |
         sudo apt-get update -yq
-        sudo apt-get install -yq cmake doxygen
+        sudo apt-get install -yq cmake
         cmake --version
 
     ## Kokkos
@@ -130,18 +129,3 @@ jobs:
       # only need to scan with a single build config if the installed cmake config files work
       if: matrix.compiler == 'g++' && matrix.build_type == 'Release'
       uses: github/codeql-action/analyze@v3
-
-    - name: Generate Doc
-      if: matrix.compiler == 'g++' && matrix.build_type == 'Release'
-      run: doxygen ${{github.workspace}}/build-meshFields/Doxyfile
-    
-    - name: Upload artifact
-      if: matrix.compiler == 'g++' && matrix.build_type == 'Release'
-      uses: actions/upload-pages-artifact@v3
-      with:
-        path: ./docs/html
-
-    - name: Deploy to GitHub Pages
-      if: matrix.compiler == 'g++' && matrix.build_type == 'Release'
-      id: deployment
-      uses: actions/deploy-pages@v4

.github/workflows/doxygen-gh-pages.yml

@@ -0,0 +1,91 @@
+name: Doxygen GitHub Pages Deploy Action
+
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  deploy:
+    runs-on: ubuntu-22.04
+    permissions:
+      contents: read
+      pages: write
+      id-token: write
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: recursive
+      
+      - name: Install dependencies
+        run: |
+              sudo apt update
+              sudo apt install g++ cmake doxygen
+
+      - name: Kokkos Checkout repo
+        uses: actions/checkout@v4
+        with:
+            repository: kokkos/kokkos
+            path: kokkos
+
+      - name: Kokkos Configure CMake
+        shell: bash
+        run: cmake -S $GITHUB_WORKSPACE/kokkos -B ${{runner.workspace}}/build-kokkos
+            -DCMAKE_CXX_COMPILER=g++
+            -DKokkos_ENABLE_SERIAL=ON 
+            -DKokkos_ENABLE_OPENMP=OFF
+            -DCMAKE_INSTALL_PREFIX=${{runner.workspace}}/build-kokkos/install
+
+      - name: Kokkos Build
+        shell: bash
+        run: cmake --build ${{runner.workspace}}/build-kokkos --parallel 2 --target install
+
+        ## Omegah
+      - name: Omega_h Checkout repo
+        uses: actions/checkout@v4
+        with:
+            repository: sandialabs/omega_h
+            path: omegah
+
+      - name: Omega_h Configure CMake
+        shell: bash
+        run: cmake -S $GITHUB_WORKSPACE/omegah -B ${{runner.workspace}}/build-omegah
+            -DCMAKE_BUILD_TYPE=Release
+            -DCMAKE_CXX_COMPILER=g++
+            -DBUILD_SHARED_LIBS=OFF
+            -DOmega_h_USE_Kokkos=ON
+            -DKokkos_PREFIX=${{runner.workspace}}/build-kokkos/install/lib/cmake
+            -DOmega_h_USE_MPI=OFF
+            -DCMAKE_INSTALL_PREFIX=${{runner.workspace}}/build-omegah/install
+
+      - name: Omega_h Build
+        shell: bash
+        run: cmake --build ${{runner.workspace}}/build-omegah --parallel 2 --target install
+    
+      ## MeshFields
+      - name: MeshFields Checkout repo
+        uses: actions/checkout@v4
+        with:
+            repository: SCOREC/meshFields
+            path: meshFields
+
+      - name: MeshFields Configure CMake
+        shell: bash
+        run: cmake -S $GITHUB_WORKSPACE/meshFields -B ${{runner.workspace}}/build-meshFields
+            -DCMAKE_CXX_COMPILER=g++
+            -DKokkos_ROOT=${{runner.workspace}}/build-kokkos/install
+            -DMeshFields_USE_Cabana=OFF
+            -DOmega_h_ROOT=${{runner.workspace}}/build-omegah/install
+            -DCMAKE_INSTALL_PREFIX=${{runner.workspace}}/build-meshFields/install
+      
+      - name: Generate Doc
+        run: doxygen ${{runner.workspace}}/build-meshFields/Doxyfile
+
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: ./docs/html
+
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4