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jacobmersonjacobmerson
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Merge branch 'develop' into fuad-commits-not-interpolation
2 parents 2ddbfae + 72318ed commit 502999e

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‎.github/actions/install-repo/action.yml‎

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name: Install-Repo
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inputs:
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repo-name:
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required: true
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repo-path:
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required: true
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repo-ref:
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required: true
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options:
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required: true
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cache:
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required: true
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runs:
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using: "composite"
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steps:
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- name: Check Cache
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if: ${{ inputs.cache == 'true'}}
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uses: actions/cache@v3
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id: check-cache
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with:
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key: build-${{ inputs.repo-name }}
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path: ${{ runner.temp }}/build-${{ inputs.repo-name }}
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- name: Checkout Repo
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uses: actions/checkout@v3
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with:
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repository: ${{inputs.repo-path }}
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ref: ${{ inputs.repo-ref }}
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path: ${{ inputs.repo-name }}
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- name: Configure CMake
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if: ${{ !steps.check-cache.outputs.cache-hit }}
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shell: bash
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run: cmake -S $GITHUB_WORKSPACE/${{ inputs.repo-name }} -B ${{ runner.temp }}/build-${{ inputs.repo-name }}
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-DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/build-${{ inputs.repo-name }}/install
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${{ inputs.options }}
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- name: Build Cmake
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if: ${{ !steps.check-cache.outputs.cache-hit }}
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shell: bash
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run: cmake --build ${{ runner.temp }}/build-${{ inputs.repo-name }} -j8 --target install

‎.github/workflows/cmake-test.yml‎

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name: Test-Build
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on:
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push:
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schedule:
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- cron: '12 14 * * 3'
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jobs:
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test-build:
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash
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strategy:
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matrix:
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build_type: [Release]
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memory_test: [ON, OFF]
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compiler: [g++]
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language: ['cpp']
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exclude:
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- build_type: Release
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memory_test: ON
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- build_type: RelWithDebInfo
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memory_test: OFF
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steps:
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- name: Update packages
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run: sudo apt-get update
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- name: Install mpi
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run: sudo apt-get install -yq mpich libmpich-dev
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- uses: actions/checkout@v4
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- name: build kokkos
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uses: ./.github/actions/install-repo
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with:
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repo-name: 'kokkos'
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repo-path: 'kokkos/kokkos'
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repo-ref: '4.2.00'
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cache: true
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options: '-DCMAKE_CXX_COMPILER=${{ matrix.compiler }}
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-DKokkos_ENABLE_SERIAL=ON
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-DKokkos_ENABLE_OPENMP=off
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-DKokkos_ENABLE_CUDA=off
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-DKokkos_ENABLE_CUDA_LAMBDA=off
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-DKokkos_ENABLE_DEBUG=on'
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- name: build ADIOS2
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uses: ./.github/actions/install-repo
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with:
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repo-name: 'ADIOS2'
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repo-path: 'ornladios/ADIOS2'
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repo-ref: ''
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cache: true
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options: '-DADIOS2_USE_CUDA=off
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-DCMAKE_BUILD_TYPE=Release
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-DCMAKE_CXX_COMPILER=mpicxx
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-DCMAKE_C_COMPILER=mpicc'
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- name: build perfstubs
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uses: ./.github/actions/install-repo
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with:
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repo-name: 'perfstubs'
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repo-path: 'UO-OACISS/perfstubs'
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repo-ref: ''
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cache: true
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options: '-DCMAKE_BUILD_TYPE=Release
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-DCMAKE_CXX_COMPILER=mpicxx
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-DCMAKE_C_COMPILER=mpicc'
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- name: build redev
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uses: ./.github/actions/install-repo
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with:
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repo-name: 'redev'
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repo-path: 'SCOREC/redev'
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repo-ref: ''
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cache: true
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options: '-DCMAKE_BUILD_TYPE=Release
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-DCMAKE_CXX_COMPILER=mpicxx
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-DCMAKE_C_COMPILER=mpicc
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-DMPIEXEC_EXECUTABLE=`which srun`
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-Dperfstubs_DIR=${{ runner.temp }}/build-perfstubs
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-DADIOS2_ROOT=${{ runner.temp }}/build-ADIOS2/install'
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- name: build omega_h
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uses: ./.github/actions/install-repo
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with:
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repo-name: 'omega_h'
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repo-path: 'SCOREC/omega_h'
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repo-ref: ''
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cache: true
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options: '-DCMAKE_BUILD_TYPE=Release
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-DBUILD_SHARED_LIBS=off
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-DOmega_h_USE_Kokkos=on
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-DOmega_h_USE_CUDA=off
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-DOmega_h_USE_MPI=on
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-DMPIEXEC_EXECUTABLE=srun
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-DBUILD_TESTING=off
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-DCMAKE_C_COMPILER=mpicc
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-DCMAKE_CXX_COMPILER=mpicxx
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-DKokkos_PREFIX=${{ runner.temp }}/build-kokkos/install/lib/cmake'
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- name: build Catch2
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uses: ./.github/actions/install-repo
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with:
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repo-name: 'Catch2'
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repo-path: 'catchorg/Catch2'
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repo-ref: ''
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cache: true
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options: '-DCMAKE_BUILD_TYPE=Release
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-DCMAKE_CXX_COMPILER=mpicxx'
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- name: checkout pcms_testcases
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uses: actions/checkout@v3
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with:
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repository: jacobmerson/pcms_testcases
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path: pcms_testcases
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- name: Install fftw3
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run: sudo apt-get install -yq fftw3 fftw3-dev pkg-config
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- name: build pcms
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uses: ./.github/actions/install-repo
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with:
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repo-name: 'pcms'
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repo-path: 'SCOREC/pcms'
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repo-ref: ''
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cache: false
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options: '-DCMAKE_BUILD_TYPE=Release
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-DCMAKE_C_COMPILER=mpicc
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-DCMAKE_CXX_COMPILER=mpicxx
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-Dredev_DIR=${{ runner.temp }}/build-redev/install/lib/cmake/redev
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-Dperfstubs_DIR=${{ runner.temp }}/build-perfstubs
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-DOmega_h_DIR=${{ runner.temp }}/build-omega_h/install/lib/cmake/Omega_h
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-DKokkos_DIR=${{ runner.temp }}/build-kokkos/install/lib/cmake/Kokkos
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-DCatch2_DIR=${{ runner.temp }}/build-Catch2/install/lib/cmake/Catch2
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-DPCMS_TEST_DATA_DIR=$PWD/pcms_testcases'
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# - name: Install Valgrind
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# run: sudo apt-get install -yq valgrind
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# - name: Run CTest
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# run: ctest --test-dir ${{ runner.temp }}/build-pcms
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# - name: Print Test
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# if: always()
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# run: cat ${{ runner.temp }}/build-pcms/Testing/Temporary/LastTest.log

‎.github/workflows/globus-tests.yml‎

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name: Globus-Systems
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on:
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schedule:
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# Monday 8:35 UTC or 04:35 EDT
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- cron: '35 8 * * 1'
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jobs:
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perlmutter-test:
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uses: SCOREC/github-actions/.github/workflows/globus-test.yml@main
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secrets: inherit
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with:
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machine: "perlmutter"

‎.github/workflows/perlmutter/install.sh‎

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#!/bin/bash -e
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branch=$1
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cd $SCRATCH/globus-compute/pcms-test
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module load cray-fftw
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# # kokkos
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# rm build-kokkos -rf
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# # rm kokkos -rf
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# git clone -b 4.2.00 https://github.com/kokkos/kokkos.git
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# cmake -S kokkos -B build-kokkos \
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# -DCMAKE_INSTALL_PREFIX=build-kokkos/install \
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# -DCMAKE_BUILD_TYPE="Release" \
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# -DCMAKE_CXX_COMPILER=$PWD/kokkos/bin/nvcc_wrapper \
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# -DKokkos_ARCH_AMPERE80=ON \
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# -DKokkos_ENABLE_SERIAL=ON \
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# -DKokkos_ENABLE_OPENMP=off \
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# -DKokkos_ENABLE_CUDA=on \
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# -DKokkos_ENABLE_CUDA_LAMBDA=on \
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# -DKokkos_ENABLE_CUDA_CONSTEXPR=on \
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# -DKokkos_ENABLE_DEBUG=off
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# cmake --build build-kokkos -j 24 --target install
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# # ADIOS2
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# rm build-ADIOS2 -rf
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# # rm ADIOS2 -rf
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# git clone git@github.com:ornladios/ADIOS2.git
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# cmake -S ADIOS2/ -B build-ADIOS2 \
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# -DCMAKE_INSTALL_PREFIX=build-ADIOS2/install \
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# -DADIOS2_USE_CUDA=on \
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# -DCMAKE_BUILD_TYPE=Release \
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# -DCMAKE_CXX_COMPILER=CC \
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# -DCMAKE_C_COMPILER=cc
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# cmake --build build-ADIOS2 --target install -j8
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# # perfstubs
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# rm build-perfstubs -rf
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# # rm perfstubs -rf
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# git clone git@github.com:UO-OACISS/perfstubs.git
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# cmake -S perfstubs -B build-perfstubs \
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# -DCMAKE_CXX_COMPILER=CC \
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# -DCMAKE_C_COMPILER=cc \
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# -DCMAKE_INSTALL_PREFIX=build-perfstubs/install
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# cmake --build build-perfstubs -j2 --target install
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# # redev
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# rm build-redev -rf
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# # rm redev -rf
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# git clone git@github.com:SCOREC/redev.git
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# cmake -S redev -B build-redev \
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# -DCMAKE_CXX_COMPILER=CC \
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# -DCMAKE_C_COMPILER=cc \
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# -DMPIEXEC_EXECUTABLE=`which srun` \
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# -DCMAKE_BUILD_TYPE=Release \
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# -DCMAKE_INSTALL_PREFIX=build-redev/install \
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# -Dperfstubs_DIR=$PWD/build-perfstubs \
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# -DADIOS2_ROOT=build-ADIOS2/install
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# cmake --build build-redev -j2 --target install
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# # omega_h
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# rm build-omega_h -rf
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# # rm omega_h -rf
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# git clone git@github.com:SCOREC/omega_h.git
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# cmake -S omega_h -B build-omega_h \
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# -DCMAKE_INSTALL_PREFIX=build-omega_h/install \
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# -DCMAKE_BUILD_TYPE=Release \
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# -DBUILD_SHARED_LIBS=off \
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# -DOmega_h_USE_Kokkos=ON \
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# -DOmega_h_USE_CUDA=on \
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# -DOmega_h_CUDA_ARCH=80 \
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# -DOmega_h_USE_MPI=on \
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# -DMPIEXEC_EXECUTABLE=srun \
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# -DBUILD_TESTING=off \
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# -DCMAKE_C_COMPILER=cc \
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# -DCMAKE_CXX_COMPILER=CC \
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# -DKokkos_PREFIX=build-kokkos/install/lib64/cmake
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# cmake --build build-omega_h -j24 --target install
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# # Catch2
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# rm build-Catch2 -rf
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# # rm Catch2 -rf
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# git clone https://github.com/catchorg/Catch2
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# cmake -S Catch2 -B build-Catch2 \
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# -DCMAKE_INSTALL_PREFIX=$PWD/build-Catch2/install \
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# -DCMAKE_CXX_COMPILER=CC
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# cmake --build build-Catch2 -j2 --target install
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# pcms
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rm pcms -rf
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rm build-pcms -rf
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rm pcms_testcases -rf
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git clone git@github.com:jacobmerson/pcms_testcases.git
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git clone https://github.com/SCOREC/pcms.git
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cd pcms && git checkout $branch && cd -
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cmake -S pcms -B build-pcms \
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-DCMAKE_C_COMPILER=cc \
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-DCMAKE_CXX_COMPILER=CC \
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-DCMAKE_BUILD_TYPE=Release \
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-DPCMS_TIMEOUT=0 \
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-Dperfstubs_DIR=$PWD/build-perfstubs \
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-Dredev_DIR=$PWD/build-redev/install/lib64/cmake/redev \
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-DOmega_h_DIR=$PWD/build-omega_h/install/lib64/cmake/Omega_h/ \
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-DKokkos_DIR=$PWD/build-kokkos/install/lib64/cmake/Kokkos/ \
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-DCatch2_DIR=$PWD/build-Catch2/install/lib64/cmake/Catch2/ \
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-DPCMS_TEST_DATA_DIR=$PWD/pcms_testcases
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cmake --build build-pcms -j8

‎.github/workflows/perlmutter/run.sh‎

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#!/bin/bash
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name=pcms
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cd $SCRATCH/globus-compute/$name-test
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module load cray-fftw
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cd build-$name
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salloc --time 00:20:00 --constrain=gpu --qos=interactive --nodes=1 --ntasks-per-node=40 --cpus-per-task=1 --gpus=1 --account=m4564 ctest
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cat $PWD/Testing/Temporary/LastTest.log

‎.github/workflows/update_doxygen_page.yml‎

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name: Update Doxygen Page
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on:
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push:
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branches:
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- master
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jobs:
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doxygen:
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runs-on: ubuntu-latest
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permissions:
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contents: write
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steps:
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- name: Install Doxygen
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run: |
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sudo apt-add-repository universe
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sudo apt-get update
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sudo apt-get install doxygen
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- name: Checkout Original
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uses: actions/checkout@v4
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with:
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path: original
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- name: Run Doxygen
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working-directory: original
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run: doxygen
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- name: Checkout Pages
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uses: actions/checkout@v4
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with:
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path: pages
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- name: Set up pages directory
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working-directory: pages
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run: |
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git checkout --orphan gh-pages
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git rm -rf .
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cp -r ../original/html/. .
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- name: Update Github
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working-directory: pages
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run: |
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git config user.name "GitHub Actions Bot"
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git config user.email "<>"
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git add .
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git commit -m "Update page from action"
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git push -f origin gh-pages

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