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notebooks/LifeSciencesAPI/snakemake/LS_API_Snakemake.ipynb

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"This short tutorial demonstrates how to run an RNA-Seq workflow using a prokaryotic data set. Steps in the workflow include read trimming, read QC, read mapping, and counting mapped reads per gene to quantify gene expression. This tutorial uses a popular workflow manager called [Snakemake](https://snakemake.readthedocs.io/en/stable/) run via the [Google Cloud Life Sciences API](https://cloud.google.com/life-sciences/docs/reference/rest).\n",
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"<div class=\"alert alert-block alert-danger\"> <b>Warning:</b> Google Life Sciences API is deprecated (will no longer be available by July 8, 2025) and has been replaced by Google Batch. Snakemake also supports Google Batch, visit [Snakemake Cloud Execution](https://snakemake.github.io/snakemake-plugin-catalog/plugins/executor/googlebatch.html) for updates and instructions for utilizing Google Batch. </div>"
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"<div class=\"alert alert-block alert-danger\"> <b>Warning:</b> Google Life Sciences API is deprecated (will no longer be available by July 8, 2025) and has been replaced by Google Batch. Snakemake also supports Google Batch, visit <a href="https://snakemake.github.io/snakemake-plugin-catalog/plugins/executor/googlebatch.html">Snakemake Cloud Execution</a> for updates and instructions for utilizing Google Batch. </div>"
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