Connect interface (#44)

* migrate to new connect paradigm, omit all comlex runengine handling

* migrate to uv,pre-commit rework

* cicd update

* cicd fix test path

* cicd add untracked config files

* proper prefix handling

---------

Co-authored-by: Peter Braun <[email protected]>

Author: Bilchreis

.flake8

@@ -0,0 +1,17 @@
+[flake8]
+ignore = E203, W503, W505, F722, F811
+exclude =
+    .git,
+    __pycache__,
+    .pytest_cache,
+    build,
+    dist,
+    info,
+    logs,
+    pid,
+    .vscode,
+    .venv,
+    .secop-ophyd,
+    cfg/*,
+    docs,
+max-line-length = 88

.github/workflows/code.yaml

@@ -13,26 +13,14 @@ env:
 
 jobs:
 
-  lint:
-    name: Lint Codebase 
+  pre-commit:
+    name: Static Code Checks
     # pull requests are a duplicate of a branch push if within the same repo.
     if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository
     runs-on: ubuntu-latest
-
     steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install .[dev]
-
-      - name: Lint
-        run: |
-          tox -e pre-commit,mypy
-
-
+    - uses: actions/checkout@v4
+    - uses: pre-commit/[email protected]
 
 
   test:
@@ -47,28 +35,26 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+
+    - name: Install uv and set the python version
+      uses: astral-sh/setup-uv@v6
       with:
         python-version: ${{ matrix.python-version }}
-   
-    
+
+
 
     - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install .[dev]
-   
+      run: uv sync --all-extras
+
     - name: Add PATH envirnoment variable for xprocess
       run: |
-        pip freeze
         echo "PATH_VAR=$PATH" >> "$GITHUB_ENV"
-    
-    - name: Run Tests 
+
+    - name: Run Tests
       run: |
-        tox -e pytest
-        
-        
+        uv run pytest tests/ -v
+
+
   build:
     name: Build distribution 📦
     runs-on: ubuntu-latest
@@ -97,7 +83,7 @@ jobs:
     name: >-
       Publish to PyPI
     if: ${{startsWith(github.ref, 'refs/tags/')}}  # only publish to PyPI on tag pushes
-    needs: [lint,test,build]
+    needs: [pre-commit,test,build]
     runs-on: ubuntu-latest
     environment:
       name: pypi
@@ -113,14 +99,3 @@ jobs:
         path: dist/
     - name: Publish distribution 📦 to PyPI
       uses: pypa/gh-action-pypi-publish@release/v1
-
-
-
-
-
-
-
-
-
-
-

.gitignore

@@ -8,4 +8,4 @@ dist
 **/_version.py
 pid
 logs
-.secop-ophyd
+.secop-ophyd

.isort.cfg

@@ -0,0 +1,3 @@
+[settings]
+profile=black
+line_length = 88

.mypy.ini

@@ -0,0 +1,8 @@
+[mypy]
+# Ignore missing stubs in imported modules
+ignore_missing_imports = true
+#plugins = ["numpy.typing.mypy_plugin"]
+check_untyped_defs = true
+exclude = [
+    '^cfg'
+    ]

.pre-commit-config.yaml

@@ -1,39 +1,39 @@
 repos:
+
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
-      - id: check-added-large-files
-      - id: check-yaml
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-ast
+      - id: check-case-conflict
       - id: check-merge-conflict
-
-  - repo: local
-    hooks:
-      - id: black
-        name: Run black
-        stages: [pre-commit]
-        language: system
-        entry: black --check --diff src tests
-        types: [python]
-        exclude: |
-          (?x)^(
-              cfg/|
-              frappy_modules/|
-              logs/|
-              pid/
-          )
+      - id: check-yaml
+      - id: debug-statements
 
   - repo: https://github.com/pycqa/flake8
-    rev: '7.2.0'  # You can use a more recent version if available
+    rev: 6.1.0
     hooks:
       - id: flake8
-        additional_dependencies: [flake8-pyproject]
-        args: [src, tests, docs]
-        exclude: |
-          (?x)^(
-              cfg/|
-              frappy_modules/|
-              logs/|
-              pid/
-          )
 
+  - repo: https://github.com/PyCQA/isort
+    rev: 6.0.1
+    hooks:
+      - id: isort
 
+  - repo: https://github.com/psf/black
+    rev: 25.1.0
+    hooks:
+      - id: black
+
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.5.0
+    hooks:
+      - id: nbstripout
+
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: 'v1.18.2'  # Use the sha / tag you want to point at
+    hooks:
+    -   id: mypy
+        args: [--config-file=.mypy.ini]
+        exclude: ^cfg/

.vscode/launch.json

@@ -14,4 +14,4 @@
             //"postDebugTask": "stop server"
         }
     ]
-}
+}

.vscode/settings.json

@@ -1,6 +1,6 @@
 {
     "python.testing.pytestArgs": [
-        "tests/."
+        "tests"
     ],
     "python.testing.unittestEnabled": false,
     "python.testing.pytestEnabled": true,
@@ -16,10 +16,10 @@
 
 
 
-    
-    
 
 
-  
-  
-}
+
+
+
+
+}

.vscode/tasks.json

@@ -5,7 +5,7 @@
 		  "label": "start server",
 		  "type": "shell",
 		  "isBackground": true,
-		 //"command":"pwd", 
+		 //"command":"pwd",
 		 "command": "python",
 		 "args": ["${workspaceFolder}/frappy/bin/frappy-server","-c","${workspaceFolder}/frappy/cfg/cryo_cfg.py","cryo"],
 		 "presentation": { "reveal": "silent" },
@@ -34,4 +34,4 @@
 	  "command": "workbench.action.tasks.terminate",
 	  "args": "terminateAll"
 	}]
-  }
+  }

README.md

@@ -7,7 +7,7 @@ This package allows seamless itegration of hardware that provides a SECoP interf
 
 
 
-## Getting Started 
+## Getting Started
 A demo repository that shows the full functionality of the integration is provided here:
 
 [secop-sim](https://codebase.helmholtz.cloud/rock-it-secop/secop-sim)