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NAMESPACE
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137 lines (136 loc) · 3.66 KB
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# Generated by roxygen2: do not edit by hand
export(Diferential_boxplot)
export(Goterms_finder)
export(barplot_func)
export(boxplot_function)
export(corrplot_function)
export(dotplot_func)
export(filter_valids)
export(histogram)
export(identify_proteins)
export(igraph_analysis)
export(impute_KNN_data)
export(impute_data)
export(interactions_down)
export(interactions_up)
export(median_centering)
export(my_heatmap)
export(my_heatmap_differential)
export(normalization_func)
export(obtain_LOG.names)
export(obtain_unique_proteins)
export(pca)
export(plotCV2)
export(postimputation_state)
export(preimputation_state)
export(qqplot_function)
export(quick_filtering)
export(runTraianProt)
export(scatterplot_function)
export(statistical_analysis)
export(traian_to_SE)
export(traianprot_power_curve)
export(tsne)
export(unique_peptides_filter)
export(venn_diagram)
export(volcano_plot)
export(volcano_plot_tiff)
import(ggplot2)
import(grid)
importFrom(DEqMS,spectraCounteBayes)
importFrom(DOSE,theme_dose)
importFrom(Rtsne,Rtsne)
importFrom(STRINGdb,STRINGdb)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(VIM,aggr)
importFrom(VIM,kNN)
importFrom(VennDiagram,venn.diagram)
importFrom(clusterProfiler,enrichGO)
importFrom(data.table,fread)
importFrom(dplyr,"%>%")
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,c_across)
importFrom(dplyr,case_when)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,starts_with)
importFrom(dplyr,ungroup)
importFrom(enrichplot,dotplot)
importFrom(ggExtra,ggMarginal)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_qq_line)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,remove_missing)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,stat_ellipse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(gplots,greenred)
importFrom(gprofiler2,gconvert)
importFrom(gprofiler2,gost)
importFrom(graphics,hist)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,text)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,loessFit)
importFrom(limma,topTable)
importFrom(matrixStats,rowMins)
importFrom(matrixStats,rowSds)
importFrom(methods,"slot<-")
importFrom(methods,new)
importFrom(methods,slot)
importFrom(pheatmap,pheatmap)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(shiny,runApp)
importFrom(stats,cor)
importFrom(stats,heatmap)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,power.t.test)
importFrom(stats,prcomp)
importFrom(stats,qqnorm)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(stringr,str_replace)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_longer)
importFrom(utils,read.delim)
importFrom(wrMisc,normalizeThis)
importFrom(wrProteo,readMaxQuantFile)