runmakefile

#! /bin/bash
# runmakefile
# Geoffrey Hannigan
# Pat Schloss Lab
# University of Michigan
# Use this to submit the makefile to the server

#PBS -N runmakefile-conjviribus
#PBS -q fluxod
#PBS -l qos=flux
#PBS -l nodes=1:ppn=4,mem=16GB
#PBS -l walltime=50:00:00
#PBS -j oe
#PBS -V
#PBS -A pschloss_fluxod

# # Load in modules
# module load gcc/4.9.2
# # Set the proper R module
# module load R/3.3.2
# # Load perl modules
# module load perl/5.22.1
# module load perl-modules/5.22.1
# # Python is a module dependency
# module load python/2.7.10
# module load concoct/0.4.0

cd /nfs/turbo/schloss-lab/ghannig/Hannigan-2016-ColonCancerVirome || exit

# Print working directory
echo Working in $(pwd)

# Run make
make ./data/contigclustersidentity/VirusRepsetIds.tsv