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Merge branch 'master' into dev_classification
# Conflicts: # requirements.txt
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CNAME

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www.dlstream.io

Readme.md

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[![GitHub stars](https://img.shields.io/github/stars/SchwarzNeuroconLab/DeepLabStream.svg?style=social&label=Star)](https://github.com/SchwarzNeuroconLab/DeepLabStream)
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[![GitHub forks](https://img.shields.io/github/forks/SchwarzNeuroconLab/DeepLabStream.svg?style=social&label=Fork)](https://github.com/SchwarzNeuroconLab/DeepLabStream)
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[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
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[![Twitter Follow](https://img.shields.io/twitter/follow/SNeuroconnect.svg?label=SNeuroconnect&style=social)](https://twitter.com/SNeuroconnect)
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[![Twitter Follow](https://img.shields.io/twitter/follow/SNeuroconnect.svg?label=SNeuroconnect&style=social)](https://twitter.com/SNeuroconnect) [![Join the chat at https://gitter.im/DLStream/community](https://badges.gitter.im/DLStream/community.svg)](https://gitter.im/DLStream/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
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DeepLabStream is a python based multi-purpose tool that enables the realtime tracking and manipulation of animals during ongoing experiments.
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Our toolbox was orginally adapted from the previously published [DeepLabCut](https://github.com/AlexEMG/DeepLabCut) ([Mathis et al., 2018](https://www.nature.com/articles/s41593-018-0209-y)) and expanded on its core capabilities, but is now able to utilize a variety of different network architectures for online pose estimation
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![DLS_Stim](docs/DLSSTim_example.gif)
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## Read the news:
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- Real-time behavioral analysis using artificial intelligence @ [Federal Ministry of Education and Research](http://www.research-in-germany.org/news/2021/2/2021-02-19_Real-time_behavioural_analysis_using_artificial_intelligence.html), [Uni Bonn](https://www.uni-bonn.de/news/real-time-behavioral-analysis-using-artificial-intelligence) and [Phys.org](https://phys.org/news/2021-02-real-time-behavioral-analysis-artificial-intelligence.html)
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- Understanding AI: How studying Neural Net and Human Brain Helps @ [AnalyticsInsight.net](https://www.analyticsinsight.net/understanding-ai-how-studying-neural-net-and-human-brain-helps/)
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- We are also featured on [open-neuroscience.com](https://open-neuroscience.com/post/deeplabstream/)!
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## New features:
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#### 02/2021: Multiple Animal Experiments (Pre-release): Full [SLEAP](https://github.com/murthylab/sleap) integration (Full release coming soon!)
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- Updated [Installation](https://github.com/SchwarzNeuroconLab/DeepLabStream/wiki/Installation-&-Testing) (for SLEAP support)
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- Single Instance and Multiple Instance models (TopDown & BottomUp) integration (SLEAP v1.1.0a10), more coming soon!
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- Single Instance and Multiple Instance models (TopDown & BottomUp) integration (SLEAP v1.1), more coming soon!
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- [New Multiple Animal Experiment Tutorial](https://github.com/SchwarzNeuroconLab/DeepLabStream/wiki/Multiple-Animal-Experiments)
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#### 01/2021: DLStream was published in [Communications Biology](https://www.nature.com/articles/s42003-021-01654-9)
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#### Contributing
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If you have feature requests or questions regarding the design of experiments join our [slack group](https://join.slack.com/t/dlstream/shared_invite/zt-jpy2olk1-CuJu0ZylGg_SLbO7zBkcrg)!
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If you have feature requests or questions regarding the design of experiments join our [slack group](https://join.slack.com/t/dlstream/shared_invite/zt-jpy2olk1-CuJu0ZylGg_SLbO7zBkcrg) or go to [Gitter](https://gitter.im/DLStream/community) for a quick chat!
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We are constantly working to update and increase the capabilities of DLStream.
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We welcome all feedback and input from your side.

_config.yml

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theme: jekyll-theme-slate

requirements.txt

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PySide2==5.14.1
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numba==0.51.1
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PySide2==5.15.2
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gpiozero==1.5.1
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pigpio==1.78
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pyserial==3.5
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scikit-image==0.17.2
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scipy==1.4.1
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pure-predict==0.0.4
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numba==0.51.1

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