Update tests with big fixes

Author: MaxBetzDLR

cpp/memilio/mobility/graph.h

@@ -153,9 +153,7 @@ class Graph
     using NodeProperty = NodePropertyT;
     using EdgeProperty = EdgePropertyT;
 
-    /** add note for same size of parameters
-     */
-    Graph(const std::vector<int>& node_ids, std::vector<NodePropertyT>& node_properties)
+    Graph(const std::vector<int>& node_ids, const std::vector<NodePropertyT>& node_properties)
     {
         assert(node_ids.size() == node_properties.size());
 

cpp/models/ode_secirvvs/parameters_io.cpp

@@ -703,7 +703,8 @@ IOResult<void> set_divi_data(const mio::VectorRange<Node<Model<ScalarType>>>& mo
 
 IOResult<void> read_input_data(const mio::VectorRange<Node<Model<ScalarType>>>& model, Date date,
                                const std::vector<ScalarType>& scaling_factor_inf, ScalarType scaling_factor_icu,
-                               int num_days, const mio::regions::de::EpidataFilenames& epidata_filenames)
+                               int num_days, const mio::regions::de::EpidataFilenames& epidata_filenames, 
+                               bool set_death)
 {
 
     BOOST_OUTCOME_TRY(
@@ -714,7 +715,7 @@ IOResult<void> read_input_data(const mio::VectorRange<Node<Model<ScalarType>>>&
     BOOST_OUTCOME_TRY(details::set_divi_data(model, epidata_filenames.divi_data_path, date, scaling_factor_icu));
 
     BOOST_OUTCOME_TRY(
-        details::set_confirmed_cases_data(model, epidata_filenames.case_data_path, date, scaling_factor_inf));
+        details::set_confirmed_cases_data(model, epidata_filenames.case_data_path, date, scaling_factor_inf, set_death));
     BOOST_OUTCOME_TRY(details::set_population_data(model, epidata_filenames.population_data_path,
                                                    epidata_filenames.case_data_path, date));
     return success();
@@ -739,7 +740,7 @@ IOResult<void> export_input_data_timeseries(const mio::VectorRange<Node<Model<Sc
 
         // TODO: empty vaccination data path guard
         BOOST_OUTCOME_TRY(
-            read_input_data(model, offset_day, scaling_factor_inf, scaling_factor_icu, num_days, epidata_filenames));
+            read_input_data(model, offset_day, scaling_factor_inf, scaling_factor_icu, num_days, epidata_filenames, true));
 
         for (size_t r = 0; r < model.size(); r++) {
             extrapolated_data[r][t] = model[r].property.get_initial_values();

cpp/models/ode_secirvvs/parameters_io.h

@@ -96,7 +96,7 @@ IOResult<void> set_confirmed_cases_data(Model<ScalarType>& model, const std::vec
  * @param[in] path Path to the confirmed cases data file.
  * @param[in] date Date at which the data is read.
  * @param[in] scaling_factor_inf Factors by which to scale the confirmed cases of rki data.
- * @param set_death[in] If true, set the number of deaths.
+ * @param[in] set_death If true, set the number of deaths.
  */
 IOResult<void> set_confirmed_cases_data(const mio::VectorRange<Node<Model<ScalarType>>>& model, const std::string& path,
                                         Date date, const std::vector<ScalarType>& scaling_factor_inf,
@@ -334,12 +334,14 @@ IOResult<void> set_vaccination_data(const mio::VectorRange<Node<Model<FP>>>& mod
  * @param[in] scaling_factor_icu Scaling factor for ICU cases.
  * @param[in] num_days Number of days to simulate.
  * @param[in] epidata_filenames Object containing the input data file paths.
+ * @param[in] set_death If true, set the number of deaths.
  *
  * @return An IOResult indicating success or failure.
  */
 IOResult<void> read_input_data(const mio::VectorRange<Node<Model<ScalarType>>>& model, Date date,
                                const std::vector<ScalarType>& scaling_factor_inf, ScalarType scaling_factor_icu,
-                               int num_days, const mio::regions::de::EpidataFilenames& epidata_filenames);
+                               int num_days, const mio::regions::de::EpidataFilenames& epidata_filenames,
+                               bool set_death = false);
 
 /**
  * @brief Converts input data from one range of models to another with different type.