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lines changed Original file line number Diff line number Diff line change 2
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BifurcationKit = " 0f109fa4-8a5d-4b75-95aa-f515264e7665"
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Catalyst = " 479239e8-5488-4da2-87a7-35f2df7eef83"
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DataFrames = " a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
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+ DiffEqParamEstim = " 1130ab10-4a5a-5621-a13d-e4788d82bd4c"
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DifferentialEquations = " 0c46a032-eb83-5123-abaf-570d42b7fbaa"
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Distributions = " 31c24e10-a181-5473-b8eb-7969acd0382f"
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Documenter = " e30172f5-a6a5-5a46-863b-614d45cd2de4"
@@ -12,6 +13,8 @@ ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
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NonlinearSolve = " 8913a72c-1f9b-4ce2-8d82-65094dcecaec"
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Optim = " 429524aa-4258-5aef-a3af-852621145aeb"
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Optimization = " 7f7a1694-90dd-40f0-9382-eb1efda571ba"
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+ OptimizationNLopt = " 4e6fcdb7-1186-4e1f-a706-475e75c168bb"
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+ OptimizationOptimJL = " 36348300-93cb-4f02-beb5-3c3902f8871e"
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OptimizationOptimisers = " 42dfb2eb-d2b4-4451-abcd-913932933ac1"
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OrdinaryDiffEq = " 1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
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PEtab = " 48d54b35-e43e-4a66-a5a1-dde6b987cf69"
@@ -30,6 +33,7 @@ Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
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BifurcationKit = " 0.3"
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Catalyst = " 13"
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DataFrames = " 1"
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+ DiffEqParamEstim = " 2.1"
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DifferentialEquations = " 7.7"
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Distributions = " 0.25"
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Documenter = " 0.27"
Original file line number Diff line number Diff line change @@ -16,8 +16,10 @@ pages = Any["Home" => "index.md",
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" catalyst_applications/homotopy_continuation.md" ,
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" catalyst_applications/nonlinear_solve.md" ,
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" catalyst_applications/bifurcation_diagrams.md" ],
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- " Inverse Problems" => Any[" inverse_problems/parameter_estimation.md" ,
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- " inverse_problems/petab_ode_param_fitting.md" ,
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- " inverse_problems/structural_identifiability.md" ],
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- " FAQs" => " faqs.md" ,
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+ " inverse_problems/petab_ode_param_fitting.md" ,
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+
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+ " Inverse Problems" => Any[" inverse_problems/optimization_ode_param_fitting.md" ,
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+ " inverse_problems/petab_ode_param_fitting.md" ,
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+ " inverse_problems/structural_identifiability.md" ,
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+ " Inverse problem examples" => Any[" inverse_problems/examples/ode_fitting_oscillation.md" ]],
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" API" => " api/catalyst_api.md" ]
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