Merge pull request #1394 from isaacsas/extension_clean

Remove dead deps (Requires, DynamicPolynomials), clean up extension checks

Author: isaacsas

Project.toml

@@ -7,7 +7,6 @@ Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-DynamicPolynomials = "7c1d4256-1411-5781-91ec-d7bc3513ac07"
 DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821"
 EnumX = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
@@ -19,7 +18,6 @@ MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 ModelingToolkitBase = "7771a370-6774-4173-bd38-47e70ca0b839"
 Parameters = "d96e819e-fc66-5662-9728-84c9c7592b0a"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
-Requires = "ae029012-a4dd-5104-9daa-d747884805df"
 RuntimeGeneratedFunctions = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47"
 SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 Setfield = "efcf1570-3423-57d1-acb7-fd33fddbac46"
@@ -32,6 +30,7 @@ Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 [weakdeps]
 BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665"
 CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
+DynamicPolynomials = "7c1d4256-1411-5781-91ec-d7bc3513ac07"
 GraphMakie = "1ecd5474-83a3-4783-bb4f-06765db800d2"
 HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327"
 Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
@@ -42,7 +41,7 @@ StructuralIdentifiability = "220ca800-aa68-49bb-acd8-6037fa93a544"
 CatalystBifurcationKitExtension = "BifurcationKit"
 CatalystCairoMakieExtension = "CairoMakie"
 CatalystGraphMakieExtension = ["GraphMakie", "NetworkLayout", "Makie"]
-CatalystHomotopyContinuationExtension = "HomotopyContinuation"
+CatalystHomotopyContinuationExtension = ["DynamicPolynomials", "HomotopyContinuation"]
 CatalystStructuralIdentifiabilityExtension = "StructuralIdentifiability"
 
 [compat]
@@ -68,7 +67,6 @@ ModelingToolkitBase = "1.11.1"
 NetworkLayout = "0.4.7"
 Parameters = "0.12"
 Reexport = "1.0"
-Requires = "1.0"
 RuntimeGeneratedFunctions = "0.5.12"
 SciMLBase = "2.84"
 Setfield = "1"

docs/Project.toml

@@ -8,6 +8,7 @@ DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0"
 DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+DynamicPolynomials = "7c1d4256-1411-5781-91ec-d7bc3513ac07"
 DynamicalSystems = "61744808-ddfa-5f27-97ff-6e42cc95d634"
 FiniteStateProjection = "069e79ea-d681-44e8-b935-95bdaf9e8f28"
 GlobalSensitivity = "af5da776-676b-467e-8baf-acd8249e4f0f"
@@ -57,6 +58,7 @@ DataInterpolations = "7.2, 8"
 DiffEqBase = "6.159.0"
 Distributions = "0.25"
 Documenter = "1.11.1"
+DynamicPolynomials = "0.6"
 FiniteStateProjection = "0.3.2"
 GlobalSensitivity = "2.6"
 GraphMakie = "0.6"

docs/make.jl

@@ -40,9 +40,7 @@ makedocs(sitename = "Catalyst.jl",
         assets = ["assets/favicon.ico"],
         canonical = "https://docs.sciml.ai/Catalyst/stable/"),
     modules = [Catalyst, ModelingToolkitBase,
-        isdefined(Base, :get_extension) ?
-        Base.get_extension(Catalyst, :CatalystGraphMakieExtension) :
-        Catalyst.CatalystGraphMakieExtension],
+        Base.get_extension(Catalyst, :CatalystGraphMakieExtension)],
     doctest = false,
     clean = true,
     pages = pages,

src/Catalyst.jl

@@ -5,7 +5,8 @@ module Catalyst
 
 using DocStringExtensions
 using SparseArrays, DiffEqBase, Reexport, Setfield, EnumX
-using LaTeXStrings, Latexify, Requires
+import SciMLBase
+using LaTeXStrings, Latexify
 using LinearAlgebra, Combinatorics
 using JumpProcesses: JumpProcesses, JumpProblem,
                      MassActionJump, ConstantRateJump, VariableRateJump,