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@@ -12,7 +12,7 @@ integer Hill exponents). The roots of these can reliably be found through a
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Catalyst contains a special homotopy continuation extension that is loaded whenever HomotopyContinuation.jl is. This exports a single function, `hc_steady_states`, that can be used to find the steady states of any `ReactionSystem` structure. If you use this in your research, please [cite the HomotopyContinuation.jl](@ref homotopy_continuation_citation) and [Catalyst.jl]() publications.
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## Basic example
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For this tutorial, we will use a model from Wilhem (2009)[^1] (which
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For this tutorial, we will use a model from Wilhelm (2009)[^1] (which
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demonstrates bistability in a small chemical reaction network). We declare the
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model and the parameter set for which we want to find the steady states:
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```@example hc1
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```@example hc3
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ps = [:k1 => 2.0, :k2 => 1.0]
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u0 = [:X1 => 1.0, :X2 => 1.0]
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hc_steady_states(wilhelm_2009_model, ps; u0)
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hc_steady_states(two_state_model, ps; u0)
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```
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## Final notes
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## References
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[^1]: [Thomas Wilhelm, *The smallest chemical reaction system with bistability*, BMC Systems Biology (2009).](https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-3-90)
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[^2]: [Paul Breiding, Sascha Timme, *HomotopyContinuation.jl: A Package for Homotopy Continuation in Julia*, International Congress on Mathematical Software (2018).](https://link.springer.com/chapter/10.1007/978-3-319-96418-8_54)
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[^3:][Andrew J Sommese, Charles W Wampler *The Numerical Solution of Systems of Polynomials Arising in Engineering and Science*, World Scientific (2005).](https://www.worldscientific.com/worldscibooks/10.1142/5763#t=aboutBook)
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[^4:][Daniel J. Bates, Paul Breiding, Tianran Chen, Jonathan D. Hauenstein, Anton Leykin, Frank Sottile, *Numerical Nonlinear Algebra*, arXiv (2023).](https://arxiv.org/abs/2302.08585)
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[^3]:[Andrew J Sommese, Charles W Wampler *The Numerical Solution of Systems of Polynomials Arising in Engineering and Science*, World Scientific (2005).](https://www.worldscientific.com/worldscibooks/10.1142/5763#t=aboutBook)
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[^4]:[Daniel J. Bates, Paul Breiding, Tianran Chen, Jonathan D. Hauenstein, Anton Leykin, Frank Sottile, *Numerical Nonlinear Algebra*, arXiv (2023).](https://arxiv.org/abs/2302.08585)
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