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lines changed Original file line number Diff line number Diff line change 285
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# values. If it has been explicitly udpated, the corresponding elimianted quantity will have its
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# vaue updated to accomodate new Γ/species values (also, the elimianted species's value can not longer be changed).
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let
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- # Prepares an `ODEProblem` with conserved quantities eliminated. Computes the conservation equation.
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+ # Prepares the problem inputs and computes the conservation equation.
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rn = @reaction_network begin
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(k1,k2), 2 X1 <--> X2
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(k3,k4), X1 + X2 <--> X3
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conserved_quantity = conservationlaw_constants (rn)[1 ]. rhs
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# Loops through the tests for different problem types.
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- oprob_old = ODEProblem (rn, u0, 1.0 , ps; remove_conserved = true )
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- sprob_old = SDEProblem (rn, u0, 1.0 , ps; remove_conserved = true )
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-
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- for prob in [oprob_old, sprob_old]
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- prob_old = prob
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-
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+ oprob = ODEProblem (rn, u0, 1.0 , ps; remove_conserved = true )
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+ sprob = SDEProblem (rn, u0, 1.0 , ps; remove_conserved = true )
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+ for prob_old in [oprob, sprob]
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# For a couple of iterations, updates the problem, ensuring that when a species is updated:
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# - Only that species and the conservation constant have their values updated.
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# The `≈` is because sometimes the computed values will not be fully exact.
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