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Update ext/CatalystStructuralIdentifiabilityExtension/structural_identifiability_extension.jl
Co-authored-by: Sam Isaacson <[email protected]>
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ext/CatalystStructuralIdentifiabilityExtension/structural_identifiability_extension.jl

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@@ -8,7 +8,7 @@ Creates a ODE system of the form used within the StructuralIdentifiability.jl pa
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Arguments:
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- `rs::ReactionSystem`; The reaction system we wish to convert to an ODE.
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- `measured_quantities=[]`: The quantities of the system we can measure. May either be equations (e.g. `x1 + x2`), or single species (e.g. the symbolic `x`, `rs.s`, or the symbol `:x`).
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- `measured_quantities=[]`: The quantities of the system we can measure. May either be equations (e.g. `x1 + x2`), or single species (e.g. the symbolic `x`, `rs.x`, or the symbol `:x`).
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- `known_p = []`: List of parameters which values are known.
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- `ignore_no_measured_warn = false`: If set to `true`, no warning is provided when the `measured_quantities` vector is empty.
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- `remove_conserved = true`: Whether to eliminate conservation laws when computing the ode (this can reduce runtime of identifiability analysis significantly).

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