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Merge pull request #1119 from sebapersson/readd_petab
Update PEtab tutorial
2 parents c9ff227 + f26ccab commit 54b8166

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docs/Project.toml

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@@ -33,6 +33,7 @@ OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce"
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OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf"
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OrdinaryDiffEqTsit5 = "b1df2697-797e-41e3-8120-5422d3b24e4a"
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OrdinaryDiffEqVerner = "79d7bb75-1356-48c1-b8c0-6832512096c2"
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PEtab = "48d54b35-e43e-4a66-a5a1-dde6b987cf69"
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Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
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QuasiMonteCarlo = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b"
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SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
@@ -77,6 +78,7 @@ OrdinaryDiffEqRosenbrock = "1"
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OrdinaryDiffEqSDIRK = "1"
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OrdinaryDiffEqTsit5 = "1"
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OrdinaryDiffEqVerner = "1"
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PEtab = "3.5"
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Plots = "1.40"
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QuasiMonteCarlo = "0.3"
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SciMLBase = "2.46"

docs/pages.jl

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@@ -46,7 +46,7 @@ pages = Any[
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],
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"Inverse problems" => Any[
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"inverse_problems/optimization_ode_param_fitting.md",
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# "inverse_problems/petab_ode_param_fitting.md",
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"inverse_problems/petab_ode_param_fitting.md",
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"inverse_problems/behaviour_optimisation.md",
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# "inverse_problems/structural_identifiability.md",
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"inverse_problems/global_sensitivity_analysis.md",

docs/src/assets/boehm___for_petab_tutorial/Best_parameters1.csv

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docs/src/assets/boehm___for_petab_tutorial/Optimisation_results1.csv

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docs/src/assets/boehm___for_petab_tutorial/Start_guesses1.csv

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