up

Author: TorkelE

docs/src/introduction_to_catalyst/introduction_to_catalyst.md

@@ -191,10 +191,10 @@ u₀map = [:m₁ => 0, :m₂ => 0, :m₃ => 0, :P₁ => 20, :P₂ => 0, :P₃ =>
 dprob = DiscreteProblem(repressilator, u₀map, tspan, pmap)
 
 # now, we create a JumpProblem, and specify Gillespie's Direct Method as the solver:
-jprob = JumpProblem(repressilator, dprob, Direct(), save_positions=(false,false))
+jprob = JumpProblem(repressilator, dprob, Direct())
 
 # now, let's solve and plot the jump process:
-sol = solve(jprob, SSAStepper(), saveat=10.)
+sol = solve(jprob, SSAStepper())
 plot(sol)
 plot(sol, plotdensity = 1000, fmt = :png) # hide
 ```

docs/src/model_creation/examples/basic_CRN_library.md

@@ -120,6 +120,7 @@ oplt = plot(osol; title = "Reaction rate equation (ODE)", plotdensity = 1000, fm
 splt = plot(ssol; title = "Chemical Langevin equation (SDE)", plotdensity = 1000, fmt = :png) # hide
 jplt = plot(jsol; title = "Stochastic chemical kinetics (Jump)", plotdensity = 1000, fmt = :png) # hide
 plot(oplt, splt, jplt; lw = 2, size=(800,800), layout = (3,1), plotdensity = 1000, fmt = :png) # hide
+plot!(bottom_margin = 3Plots.Measures.mm) # hide
 ```
 
 ## [SIR infection model](@id basic_CRN_library_sir)