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lines changed Original file line number Diff line number Diff line change @@ -4,7 +4,8 @@ CurrentModule = Catalyst
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```
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Note, currently API functions for network analysis and conservation law analysis
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- do not work with constant species (currently only generated by SBMLToolkit).
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+ do not work with constant species (which are generated by SBML, and can be [ declared
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+ in Catalyst as well] (@ref dsl_advanced_options_constant_species).
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For more information about these functions, please see the sections of the docs on
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[ network ODE representation] (@ref network_analysis_odes) and [ chemical reaction network theory] (@ref network_analysis_structural_aspects).
Original file line number Diff line number Diff line change @@ -8,7 +8,8 @@ the exported functions is given in the API section [Network Analysis and Represe
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Network Theory* [ ^ 1 ] for more discussion about the concepts on this page.
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Note, currently API functions for network analysis and conservation law analysis
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- do not work with constant species (currently only generated by SBMLToolkit).
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+ do not work with constant species (which are generated by SBML, and can be [ declared
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+ in Catalyst as well] (@ref dsl_advanced_options_constant_species).
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## [ Network representation of the Repressilator ` ReactionSystem ` ] (@id network_analysis_repressilator_representation)
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We first load Catalyst and construct our model of the repressilator
@@ -29,7 +30,7 @@ repressilator = @reaction_network Repressilator begin
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μ, P₃ --> ∅
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end
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```
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- In the [ Introduction to Catalyst ] (@ref introduction_to_catalyst )
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+ In the [ Model Visualization ] (@ref visualisation_graphs )
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tutorial we showed how the above network could be visualized as a
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species-reaction graph. There, species are represented by the nodes of the graph
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and edges show the reactions in which a given species is a substrate or product.
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