JuliaFormatter

Author: vyudu

src/Catalyst.jl

@@ -127,7 +127,8 @@ export @reaction_network, @network_component, @reaction, @species
 include("network_analysis.jl")
 export reactioncomplexmap, reactioncomplexes, incidencemat
 export complexstoichmat
-export complexoutgoingmat, incidencematgraph, linkageclasses, stronglinkageclasses, terminallinkageclasses, deficiency, subnetworks
+export complexoutgoingmat, incidencematgraph, linkageclasses, stronglinkageclasses,
+       terminallinkageclasses, deficiency, subnetworks
 export linkagedeficiencies, isreversible, isweaklyreversible
 export conservationlaws, conservedquantities, conservedequations, conservationlaw_constants
 

src/network_analysis.jl

@@ -365,7 +365,7 @@ linkageclasses(incidencegraph) = Graphs.connected_components(incidencegraph)
     Return the strongly connected components of a reaction network's incidence graph (i.e. sub-groups of reaction complexes such that every complex is reachable from every other one in the sub-group).
 """
 
-function stronglinkageclasses(rn::ReactionSystem) 
+function stronglinkageclasses(rn::ReactionSystem)
     nps = get_networkproperties(rn)
     if isempty(nps.stronglinkageclasses)
         nps.stronglinkageclasses = stronglinkageclasses(incidencematgraph(rn))
@@ -381,17 +381,17 @@ stronglinkageclasses(incidencegraph) = Graphs.strongly_connected_components(inci
     Return the terminal strongly connected components of a reaction network's incidence graph (i.e. sub-groups of reaction complexes that are 1) strongly connected and 2) every reaction in the component produces a complex in the component).
 """
 
-function terminallinkageclasses(rn::ReactionSystem) 
+function terminallinkageclasses(rn::ReactionSystem)
     nps = get_networkproperties(rn)
     if isempty(nps.terminallinkageclasses)
         slcs = stronglinkageclasses(rn)
-        tslcs = filter(lc->isterminal(lc, rn), slcs)
+        tslcs = filter(lc -> isterminal(lc, rn), slcs)
         nps.terminallinkageclasses = tslcs
     end
     nps.terminallinkageclasses
 end
 
-function isterminal(lc::Vector, rn::ReactionSystem) 
+function isterminal(lc::Vector, rn::ReactionSystem)
     imat = incidencemat(rn)
 
     for r in 1:size(imat, 2)