format

Author: TorkelE

src/reactionsystem_conversions.jl

@@ -557,10 +557,10 @@ function nonlinear_convert_differentials_check(rs::ReactionSystem)
         # If the contenct of the differential is not a variable (and nothing more).
         # If either of this is a case, throws the warning.
         if hasnode(Symbolics.is_derivative, eq.rhs) ||
-                !Symbolics.is_derivative(eq.lhs) ||
-                !isequal(Symbolics.operation(eq.lhs), Differential(get_iv(rs))) || 
-                (length(arguments(eq.lhs)) != 1) ||
-                !any(isequal(arguments(eq.lhs)[1]), nonspecies(rs))
+           !Symbolics.is_derivative(eq.lhs) ||
+           !isequal(Symbolics.operation(eq.lhs), Differential(get_iv(rs))) ||
+           (length(arguments(eq.lhs)) != 1) ||
+           !any(isequal(arguments(eq.lhs)[1]), nonspecies(rs))
             error("You are attempting to convert a `ReactionSystem` coupled with differential equations to a `NonlinearSystem`. However, some of these differentials are not of the form `D(x) ~ ...` where: 
                     (1) The left-hand side is a differential of a single variable with respect to the time independent variable, and
                     (2) The right-hand side does not contain any differentials.

src/spatial_reaction_systems/utility.jl

@@ -212,7 +212,7 @@ end
 # If all parameters the rate depend on are uniform all edges, this becomes a length 1 vector.
 # Else a vector with each value corresponding to the rate at one specific edge.
 function compute_transport_rates(rate_law::Num,
-                                p_val_dict::Dict{BasicSymbolic{Real}, Vector{Float64}}, num_edges::Int64)
+        p_val_dict::Dict{BasicSymbolic{Real}, Vector{Float64}}, num_edges::Int64)
     # Finds parameters involved in rate and create a function evaluating the rate law.
     relevant_ps = Symbolics.get_variables(rate_law)
     rate_law_func = drop_expr(@RuntimeGeneratedFunction(build_function(