Skip to content

Commit f450d9d

Browse files
authored
Update README.md
1 parent c82f7fb commit f450d9d

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

README.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -90,7 +90,7 @@ be found in its corresponding research paper, [Catalyst: Fast and flexible model
9090
- [JumpProcesses.jl](https://github.com/SciML/JumpProcesses.jl) can be used to numerically sample generated Stochastic Chemical Kinetics Jump Process models.
9191
- Support for [parallelization of all simulations](https://docs.sciml.ai/Catalyst/stable/model_simulation/ode_simulation_performance/#ode_simulation_performance_parallelisation), including parallelization of [ODE](https://docs.sciml.ai/Catalyst/stable/model_simulation/ode_simulation_performance/#ode_simulation_performance_parallelisation_GPU) and [SDE](https://docs.sciml.ai/Catalyst/stable/model_simulation/sde_simulation_performance/#sde_simulation_performance_parallelisation_GPU) simulations on GPUs using [DiffEqGPU.jl](https://github.com/SciML/DiffEqGPU.jl).
9292
- [Latexify](https://korsbo.github.io/Latexify.jl/stable/) can be used to [generate LaTeX expressions](https://docs.sciml.ai/Catalyst/stable/model_creation/model_visualisation/#visualisation_latex) corresponding to generated mathematical models or the underlying set of reactions.
93-
- [Graphviz](https://graphviz.org/) can be used to generate and [visualize reaction network graphs](https://docs.sciml.ai/Catalyst/stable/model_creation/model_visualisation/#visualisation_graphs) (reusing the Graphviz interface created in [Catlab.jl](https://algebraicjulia.github.io/Catlab.jl/stable/)).
93+
- [GraphMakie](https://github.com/MakieOrg/GraphMakie.jl) can be used to generate and [visualize reaction network graphs](https://docs.sciml.ai/Catalyst/stable/model_creation/model_visualisation/#visualisation_graphs).
9494
- Model steady states can be [computed through homotopy continuation](https://docs.sciml.ai/Catalyst/stable/steady_state_functionality/homotopy_continuation/) using [HomotopyContinuation.jl](https://github.com/JuliaHomotopyContinuation/HomotopyContinuation.jl) (which can find *all* steady states of systems with multiple ones), by [forward ODE simulations](https://docs.sciml.ai/Catalyst/stable/steady_state_functionality/nonlinear_solve/#steady_state_solving_simulation) using [SteadyStateDiffEq.jl](https://github.com/SciML/SteadyStateDiffEq.jl), or by [numerically solving steady-state nonlinear equations](https://docs.sciml.ai/Catalyst/stable/steady_state_functionality/nonlinear_solve/#steady_state_solving_nonlinear) using [NonlinearSolve.jl](https://github.com/SciML/NonlinearSolve.jl).
9595
- [BifurcationKit.jl](https://github.com/bifurcationkit/BifurcationKit.jl) can be used to [compute bifurcation diagrams](https://docs.sciml.ai/Catalyst/stable/steady_state_functionality/bifurcation_diagrams/) of model steady states (including finding periodic orbits).
9696
- [DynamicalSystems.jl](https://github.com/JuliaDynamics/DynamicalSystems.jl) can be used to compute model [basins of attraction](https://docs.sciml.ai/Catalyst/stable/steady_state_functionality/dynamical_systems/#dynamical_systems_basins_of_attraction), [Lyapunov spectrums](https://docs.sciml.ai/Catalyst/stable/steady_state_functionality/dynamical_systems/#dynamical_systems_lyapunov_exponents), and other dynamical system properties.

0 commit comments

Comments
 (0)