Merge pull request #614 from SciML/restructure

Restructure documentation and add examples from SciMLTutorials

Author: ChrisRackauckas

docs/Project.toml

@@ -21,6 +21,8 @@ JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
 JumpProblemLibrary = "faf0f6d7-8cee-47cb-b27c-1eb80cef534e"
 ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
 ODEProblemLibrary = "fdc4e326-1af4-4b90-96e7-779fcce2daa5"
+Optimization = "7f7a1694-90dd-40f0-9382-eb1efda571ba"
+OptimizationNLopt = "4e6fcdb7-1186-4e1f-a706-475e75c168bb"
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 SDEProblemLibrary = "c72e72a9-a271-4b2b-8966-303ed956772e"

docs/make.jl

@@ -5,6 +5,9 @@ using Sundials, DASKR
 cp("./docs/Manifest.toml", "./docs/src/assets/Manifest.toml", force = true)
 cp("./docs/Project.toml", "./docs/src/assets/Project.toml", force = true)
 
+ENV["PLOTS_TEST"] = "true"
+ENV["GKSwstype"] = "100"
+
 include("pages.jl")
 
 makedocs(modules = [

docs/pages.jl

@@ -1,6 +1,6 @@
 pages = Any["index.md",
-            "Tutorials" => Any["tutorials/ode_example.md",
-                               "tutorials/faster_ode_example.md",
+            "getting_started.md",
+            "Tutorials" => Any["tutorials/faster_ode_example.md",
                                "tutorials/advanced_ode_example.md",
                                "tutorials/sde_example.md",
                                "tutorials/rode_example.md",
@@ -10,6 +10,14 @@ pages = Any["index.md",
                                "tutorials/jump_diffusion.md",
                                "tutorials/bvp_example.md",
                                "tutorials/additional.md"],
+            "Examples" => Any["Beginner" => Any["examples/classical_physics.md",
+                                                "examples/conditional_dosing.md",
+                                                "examples/kepler_problem.md",
+                                                "examples/outer_solar_system.md",
+                                                "examples/min_and_max.md"],
+                              "Advanced" => Any["examples/spiking_neural_systems.md",
+                                                "examples/beeler_reuter.md",
+                                                "examples/diffusion_implicit_heat_equation.md"]],
             "Basics" => Any["basics/overview.md",
                             "basics/common_solver_opts.md",
                             "basics/solution.md",