Merge pull request #2 from foldfelis/fno

Implement 1-D Fourier Neural Operator

Author: foldfelis

.gitignore

@@ -1 +1,2 @@
 /Manifest.toml
+data

Project.toml

@@ -3,6 +3,14 @@ uuid = "ea5c82af-86e5-48da-8ee1-382d6ad7af4b"
 authors = ["JingYu Ning <[email protected]> and contributors"]
 version = "0.1.0"
 
+[deps]
+DataDeps = "124859b0-ceae-595e-8997-d05f6a7a8dfe"
+FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
+Fetch = "bb354801-46f6-40b6-9c3d-d42d7a74c775"
+Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c"
+MAT = "23992714-dd62-5051-b70f-ba57cb901cac"
+Tullio = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc"
+
 [compat]
 julia = "1.6"
 

src/NeuralOperators.jl

@@ -1,5 +1,8 @@
 module NeuralOperators
+    function __init__()
+        register_datasets()
+    end
 
-# Write your package code here.
-
+    include("preprocess.jl")
+    include("fourier.jl")
 end

src/fourier.jl

@@ -0,0 +1,81 @@
+using Flux
+using FFTW
+using Tullio
+
+export
+    SpectralConv1d,
+    FourierOperator,
+    FNO
+
+c_glorot_uniform(dims...) = Flux.glorot_uniform(dims...) + Flux.glorot_uniform(dims...) * im
+
+struct SpectralConv1d{T, S}
+    weight::T
+    in_channel::S
+    out_channel::S
+    modes::S
+    σ
+end
+
+function SpectralConv1d(
+    ch::Pair{<:Integer,<:Integer},
+    modes::Integer,
+    σ=identity;
+    init=c_glorot_uniform,
+    T::DataType=ComplexF32
+)
+    in_chs, out_chs = ch
+    scale = one(T) / (in_chs * out_chs)
+    weights = scale * init(out_chs, in_chs, modes)
+
+    return SpectralConv1d(weights, in_chs, out_chs, modes, σ)
+end
+
+Flux.@functor SpectralConv1d
+
+function (m::SpectralConv1d)(𝐱::AbstractArray)
+    𝐱_fft = fft(𝐱, 2) # [in_chs, x, batch]
+    𝐱_selected = 𝐱_fft[:, 1:m.modes, :] # [in_chs, modes, batch]
+
+    # [out_chs, modes, batch] <- [in_chs, modes, batch] [out_chs, in_chs, modes]
+    @tullio 𝐱_weighted[o, m, b] := 𝐱_selected[i, m, b] * m.weight[o, i, m]
+
+    s = size(𝐱_weighted)
+    d = size(𝐱, 2) - m.modes
+    𝐱_padded = cat(𝐱_weighted, zeros(ComplexF32, s[1], d, s[3:end]...), dims=2)
+
+    𝐱_out = ifft(𝐱_padded, 2)
+
+    return m.σ.(𝐱_out)
+end
+
+function FourierOperator(
+    ch::Pair{<:Integer,<:Integer},
+    modes::Integer,
+    σ=identity
+)
+    return Chain(
+        Parallel(+,
+            Dense(ch.first, ch.second, init=c_glorot_uniform),
+            SpectralConv1d(ch, modes)
+        ),
+        x -> σ.(x)
+    )
+end
+
+function FNO()
+    modes = 16
+    ch = 64 => 64
+    σ = x -> @. log(1 + exp(x))
+
+    return Chain(
+        Dense(2, 64, init=c_glorot_uniform),
+        FourierOperator(ch, modes, σ),
+        FourierOperator(ch, modes, σ),
+        FourierOperator(ch, modes, σ),
+        FourierOperator(ch, modes),
+        Dense(64, 128, σ, init=c_glorot_uniform),
+        Dense(128, 1, init=c_glorot_uniform),
+        flatten
+    )
+end

src/preprocess.jl

@@ -0,0 +1,33 @@
+using DataDeps
+using Fetch
+using MAT
+
+export
+    get_data
+
+function register_datasets()
+    register(DataDep(
+        "BurgersR10",
+        """
+        Burgers' equation dataset from
+        [fourier_neural_operator](https://github.com/zongyi-li/fourier_neural_operator)
+        """,
+        "https://drive.google.com/file/d/16a8od4vidbiNR3WtaBPCSZ0T3moxjhYe/view?usp=sharing",
+        "9cbbe5070556c777b1ba3bacd49da5c36ea8ed138ba51b6ee76a24b971066ecd",
+        fetch_method=gdownload,
+        post_fetch_method=unpack
+    ))
+end
+
+function get_data(; n=1000, Δsamples=2^3, grid_size=div(2^13, Δsamples))
+    file = matopen(joinpath(datadep"BurgersR10", "burgers_data_R10.mat"))
+    x_data = collect(read(file, "a")[1:n, 1:Δsamples:end]')
+    y_data = collect(read(file, "u")[1:n, 1:Δsamples:end]')
+    close(file)
+
+    x_loc_data = Array{Float32, 3}(undef, 2, grid_size, n)
+    x_loc_data[1, :, :] .= reshape(repeat(LinRange(0, 1, grid_size), n), (grid_size, n))
+    x_loc_data[2, :, :] .= x_data
+
+    return x_loc_data, y_data
+end

test/fourier.jl

@@ -0,0 +1,48 @@
+using Flux
+
+@testset "SpectralConv1d" begin
+    modes = 16
+    ch = 64 => 64
+
+    m = Chain(
+        Dense(2, 64, init=NeuralOperators.c_glorot_uniform),
+        SpectralConv1d(ch, modes)
+    )
+
+    𝐱, _ = get_data()
+    @test size(m(𝐱)) == (64, 1024, 1000)
+
+    T = Float32
+    loss(x, y) = Flux.mse(real.(m(x)), y)
+    data = [(T.(𝐱[:, :, 1:5]), rand(T, 64, 1024, 5))]
+    Flux.train!(loss, params(m), data, Flux.ADAM())
+end
+
+@testset "FourierOperator" begin
+    modes = 16
+    ch = 64 => 64
+
+    m = Chain(
+        Dense(2, 64, init=NeuralOperators.c_glorot_uniform),
+        FourierOperator(ch, modes)
+    )
+
+    𝐱, _ = get_data()
+    @test size(m(𝐱)) == (64, 1024, 1000)
+
+    T = Float32
+    loss(x, y) = Flux.mse(real.(m(x)), y)
+    data = [(T.(𝐱[:, :, 1:5]), rand(T, 64, 1024, 5))]
+    Flux.train!(loss, params(m), data, Flux.ADAM())
+end
+
+@testset "FNO" begin
+    𝐱, 𝐲 = get_data()
+    𝐱, 𝐲 = Float32.(𝐱), Float32.(𝐲)
+    @test size(FNO()(𝐱)) == size(𝐲)
+
+    m = FNO()
+    loss(𝐱, 𝐲) = sum(abs2, 𝐲 .- m(𝐱)) / size(𝐱)[end]
+    data = [(𝐱[:, :, 1:5], 𝐲[:, 1:5])]
+    Flux.train!(loss, params(m), data, Flux.ADAM())
+end

test/preprocess.jl

@@ -0,0 +1,6 @@
+@testset "get data" begin
+    xs, ys = get_data()
+
+    @test size(xs) == (2, 1024, 1000)
+    @test size(ys) == (1024, 1000)
+end

test/runtests.jl

@@ -1,6 +1,9 @@
 using NeuralOperators
 using Test
 
+ENV["DATADEPS_ALWAYS_ACCEPT"] = true
+
 @testset "NeuralOperators.jl" begin
-    # Write your tests here.
+    include("preprocess.jl")
+    include("fourier.jl")
 end