@@ -75,6 +75,12 @@ is built on, consult the
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- Chemical Reactions (via [ Catalyst.jl] ( https://github.com/SciML/Catalyst.jl ) )
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- Nonlinear Optimal Control
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+ ## Standard Library
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+
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+ For quick development, ModelingToolkit.jl includes
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+ [ ModelingToolkitStandardLibrary.jl] ( https://github.com/SciML/ModelingToolkitStandardLibrary.jl ) ,
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+ a standard library of prebuilt components for the ModelingToolkit ecosystem.
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+
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## Model Import Formats
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- [ CellMLToolkit.jl] ( https://github.com/SciML/CellMLToolkit.jl ) : Import [ CellML] ( https://www.cellml.org/ ) models into ModelingToolkit
@@ -111,12 +117,19 @@ Below is an incomplete list of extension libraries one may want to be aware of:
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- Generates ODESystems for the moment closures
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- Allows for geometrically-distributed random reaction rates
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- [ ReactionMechanismSimulator.jl] ( https://github.com/ReactionMechanismGenerator/ReactionMechanismSimulator.jl ) :
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- simulating and analyzing large chemical reaction mechanisms
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+ Simulating and analyzing large chemical reaction mechanisms
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- Ideal gas and dilute liquid phases.
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- Constant T and P and constant V adiabatic ideal gas reactors.
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- Constant T and V dilute liquid reactors.
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- Diffusion limited rates. Sensitivity analysis for all reactors.
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- Flux diagrams with molecular images (if molecular information is provided).
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+ - [ NumCME.jl] ( https://github.com/voduchuy/NumCME.jl ) : High-performance simulation of chemical master equations (CME)
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+ - Transient solution of the CME
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+ - Dynamic state spaces
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+ - Accepts reaction systems defined using Catalyst.jl DSL.
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+ - [ FiniteStateProjection.jl] ( https://github.com/kaandocal/FiniteStateProjection.jl ) : High-performance simulation of
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+ chemical master equations (CME) via finite state projections
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+ - Accepts reaction systems defined using Catalyst.jl DSL.
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## Compatible Numerical Solvers
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