update the system pages

Author: ChrisRackauckas

README.md

@@ -99,7 +99,7 @@ p  = [lorenz1.σ => 10.0,
 
 tspan = (0.0,100.0)
 prob = ODEProblem(connected,u0,tspan,p)
-sol = solve(prob,Rodas5())
+sol = solve(prob,Rodas4())
 
 using Plots; plot(sol,vars=(a,lorenz1.x,lorenz2.z))
 ```

docs/src/systems/ControlSystem.md

@@ -8,10 +8,10 @@ ControlSystem
 
 ## Composition and Accessor Functions
 
-- `sys.eqs` or `equations(sys)`: The equations that define the system.
-- `sys.states` or `states(sys)`: The set of states in the system.
-- `sys.parameters` or `parameters(sys)`: The parameters of the system.
-- `sys.controls` or `controls(sys)`: The control variables of the system
+- `get_eqs(sys` or `equations(sys)`: The equations that define the system.
+- `get_states(sys)` or `states(sys)`: The set of states in the system.
+- `get_ps(sys)` or `parameters(sys)`: The parameters of the system.
+- `get_controls(sys)` or `controls(sys)`: The control variables of the system
 
 ## Transformations
 

docs/src/systems/JumpSystem.md

@@ -8,10 +8,10 @@ JumpSystem
 
 ## Composition and Accessor Functions
 
-- `sys.eqs` or `equations(sys)`: The equations that define the jump system.
-- `sys.states` or `states(sys)`: The set of states in the jump system.
-- `sys.parameters` or `parameters(sys)`: The parameters of the jump system.
-- `sys.iv` or `independent_variable(sys)`: The independent variable of the jump system.
+- `get_eqs(sys)` or `equations(sys)`: The equations that define the jump system.
+- `get_states(sys)` or `states(sys)`: The set of states in the jump system.
+- `get_ps(sys)` or `parameters(sys)`: The parameters of the jump system.
+- `independent_variable(sys)`: The independent variable of the jump system.
 
 ## Problem Constructors
 

docs/src/systems/NonlinearSystem.md

@@ -8,9 +8,9 @@ NonlinearSystem
 
 ## Composition and Accessor Functions
 
-- `sys.eqs` or `equations(sys)`: The equations that define the nonlinear system.
-- `sys.states` or `states(sys)`: The set of states in the nonlinear system.
-- `sys.parameters` or `parameters(sys)`: The parameters of the nonlinear system.
+- `get_eqs(sys)` or `equations(sys)`: The equations that define the nonlinear system.
+- `get_states(sys)` or `states(sys)`: The set of states in the nonlinear system.
+- `get_ps(sys)` or `parameters(sys)`: The parameters of the nonlinear system.
 
 ## Transformations
 

docs/src/systems/ODESystem.md

@@ -8,10 +8,10 @@ ODESystem
 
 ## Composition and Accessor Functions
 
-- `sys.eqs` or `equations(sys)`: The equations that define the ODE.
-- `sys.states` or `states(sys)`: The set of states in the ODE.
-- `sys.parameters` or `parameters(sys)`: The parameters of the ODE.
-- `sys.iv` or `independent_variable(sys)`: The independent variable of the ODE.
+- `get_eqs(sys)` or `equations(sys)`: The equations that define the ODE.
+- `get_states(sys)` or `states(sys)`: The set of states in the ODE.
+- `get_ps(sys)` or `parameters(sys)`: The parameters of the ODE.
+- `independent_variable(sys)`: The independent variable of the ODE.
 
 ## Transformations
 

docs/src/systems/OptimizationSystem.md

@@ -8,9 +8,9 @@ OptimizationSystem
 
 ## Composition and Accessor Functions
 
-- `sys.eqs` or `equations(sys)`: The equation to be minimized.
-- `sys.states` or `states(sys)`: The set of states for the optimization.
-- `sys.parameters` or `parameters(sys)`: The parameters for the optimization.
+- `get_eqs(sys)` or `equations(sys)`: The equation to be minimized.
+- `get_states(sys)` or `states(sys)`: The set of states for the optimization.
+- `get_ps(sys)` or `parameters(sys)`: The parameters for the optimization.
 
 ## Transformations
 

docs/src/systems/ReactionSystem.md

@@ -42,10 +42,11 @@ ReactionSystem
 
 ## Composition and Accessor Functions
 
-- `sys.eqs` or `equations(sys)`: The reactions that define the system.
-- `sys.states` or `states(sys)`: The set of chemical species in the system.
-- `sys.parameters` or `parameters(sys)`: The parameters of the system.
-- `sys.iv` or `independent_variable(sys)`: The independent variable of the reaction system, usually time.
+- `get_eqs(sys)` or `equations(sys)`: The reactions that define the system.
+- `get_states(sys)` or `states(sys)`: The set of chemical species in the system.
+- `get_ps(sys)` or `parameters(sys)`: The parameters of the system.
+- `independent_variable(sys)`: The independent variable of the
+  reaction system, usually time.
 
 ## Query Functions
 ```@docs

docs/src/systems/SDESystem.md

@@ -8,10 +8,10 @@ SDESystem
 
 ## Composition and Accessor Functions
 
-- `sys.eqs` or `equations(sys)`: The equations that define the SDE.
-- `sys.states` or `states(sys)`: The set of states in the SDE.
-- `sys.parameters` or `parameters(sys)`: The parameters of the SDE.
-- `sys.iv` or `independent_variable(sys)`: The independent variable of the SDE.
+- `get_eqs(sys)` or `equations(sys)`: The equations that define the SDE.
+- `get_states(sys)` or `states(sys)`: The set of states in the SDE.
+- `get_ps(sys)s` or `parameters(sys)`: The parameters of the SDE.
+- `independent_variable(sys)`: The independent variable of the SDE.
 
 ## Transformations
 

docs/src/tutorials/ode_modeling.md

@@ -41,7 +41,7 @@ p  = [lorenz1.σ => 10.0,
 
 tspan = (0.0,100.0)
 prob = ODEProblem(connected,u0,tspan,p)
-sol = solve(prob,Rodas5())
+sol = solve(prob,Rodas4())
 
 using Plots; plot(sol,vars=(a,lorenz1.x,lorenz2.z))
 ```
@@ -150,7 +150,7 @@ p  = [lorenz1.σ => 10.0,
 
 tspan = (0.0,100.0)
 prob = ODEProblem(connected,u0,tspan,p)
-sol = solve(prob,Rodas5())
+sol = solve(prob,Rodas4())
 
 using Plots; plot(sol,vars=(a,lorenz1.x,lorenz2.z))
 ```